Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L02
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17510.1 68415.m02025 ribonuclease II family protein similar ...   123   1e-28
At5g27500.1 68418.m03287 hypothetical protein hypothetical prote...    33   0.22 
At4g18300.1 68417.m02715 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    29   2.0  
At5g38396.1 68418.m04641 F-box family protein contains F-box dom...    29   2.7  
At3g26230.1 68416.m03272 cytochrome P450 family protein contains...    29   2.7  
At1g68210.1 68414.m07792 two-component responsive regulator fami...    29   3.5  
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam...    28   4.7  
At4g18820.1 68417.m02778 expressed protein                             27   8.1  

>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
           SP|P37202 Mitotic control protein dis3
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00773: RNB-like protein
          Length = 933

 Score =  123 bits (296), Expect = 1e-28
 Identities = 66/154 (42%), Positives = 88/154 (57%)
 Frame = +3

Query: 168 MWTTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACNTCPHKDDELVLETSPKSPCALFD 347
           M  +K F  KT+ G I K VRE YLRDD+ CG+ +C +C              S  A   
Sbjct: 1   MLQSKVFNKKTRGGRIQKQVREVYLRDDIYCGAFSCKSCD-------------SSAARLS 47

Query: 348 FPHYLXLDTNVVLHQIXVLEEDALTNVIILQTVLEEVKHQNTAVFXRLLDIISNKKRKFY 527
               + +DTNVVLHQI +LE  A+  V++L  VL+EVK++N +V+ R+  + SN  R+FY
Sbjct: 48  SSKIIVVDTNVVLHQIDLLENKAIDTVVVLSVVLDEVKNRNRSVYNRIRLLCSNPARQFY 107

Query: 528 SFVNEHHXDTYIXRSPGEKQNDRNDRSIRKATSW 629
            F N  H DTY+     E  ND NDR+IR AT W
Sbjct: 108 VFSNHVHKDTYVQAMEKESANDHNDRAIRVATLW 141


>At5g27500.1 68418.m03287 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 187

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = -2

Query: 214 MLPRLVLVRKVFVVHISSVLKQASTDRLILVSKIKI 107
           +L  LVL   VFVV +S+V+  A T+R +++++++I
Sbjct: 143 VLASLVLASSVFVVRVSAVVAYAMTERPVILARLEI 178


>At4g18300.1 68417.m02715 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q64350
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Rattus norvegicus};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 709

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 244 VTIYCADLQHVTHVHTKMMNWYWRPLPNLHVLCLISH 354
           V ++C         + K   WY RP PNL V  ++SH
Sbjct: 72  VFVFCCAHSSQIIDYLKKSEWYTRPNPNLLVRTIVSH 108


>At5g38396.1 68418.m04641 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 462

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 489 LLDIISNKKRKFYSFVNEHHXDTYIXRSPGEKQNDRND 602
           L  ++S + R   +FV+  H D  I   P E + DRN+
Sbjct: 26  LTSVLSKRWRNLLAFVSNLHIDDSIFLHPEEGKRDRNE 63


>At3g26230.1 68416.m03272 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 498

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 375 NVVLHQIXVLEEDALTNVII---LQTVLEEVKHQNTAVFXRLLDIISNKKR 518
           N  LH++ V E D L N II   L+  +EE+ H    +   LLD+I  +++
Sbjct: 231 NKKLHKVFV-EVDTLLNHIIDDHLKNSIEEITHDRPDIIDSLLDMIRKQEQ 280


>At1g68210.1 68414.m07792 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 663

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +3

Query: 285 PHKDDELVLETSPKSPCALFDFPHYLX-LDTNVVLHQIXVLEE--DALTNVIILQTVLEE 455
           P K +  +LET+  +P   + FP  +  L+TN +   +   E   DAL N++ L+T +EE
Sbjct: 523 PPKTNMAILETNYSNPLD-WVFPEDITSLETNTIQKSLVSCETSYDALDNMVPLETNMEE 581

Query: 456 V 458
           +
Sbjct: 582 M 582


>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 784

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 432 ILQTVLEEVKHQNTAVFXRLLDIISNKKRKFYSFVNEH 545
           +L +  E V ++ T +F   L++I   +  FY   NEH
Sbjct: 723 VLHSSFEHVDYRVTGLFLAALEVIRRGQWNFYRLENEH 760


>At4g18820.1 68417.m02778 expressed protein
          Length = 1111

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +3

Query: 402 LEEDALTNVIILQTVLEEVKHQNTAVFXRLLDIISNKKRKFYSFVNEHHXDTYIXRSPGE 581
           L  D +  V  L+T++E    +  A+  +L  +I++     Y F  + H   +  R P  
Sbjct: 697 LSADTVNTVKNLRTIME-TSVEPLALMSQLATVITDILAGSYDFTKDQHKRKFFRRQPLP 755

Query: 582 KQNDRNDRSIRKATS 626
           K++    R   K  S
Sbjct: 756 KEDMEKLRQALKTLS 770


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,881,060
Number of Sequences: 28952
Number of extensions: 252503
Number of successful extensions: 539
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)