Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_K24
(583 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52657 Cluster: Transcription initiation factor IIA gam... 153 2e-36
UniRef50_A2XZI2 Cluster: Transcription initiation factor IIA gam... 113 3e-24
UniRef50_Q1EMR2 Cluster: Transcription initiation factor; n=12; ... 107 2e-22
UniRef50_Q9NEX2 Cluster: Probable transcription initiation facto... 103 4e-21
UniRef50_Q2UD99 Cluster: Transcription initiation factor IIA; n=... 101 9e-21
UniRef50_Q9W5B9 Cluster: Transcription initiation factor IIA gam... 101 9e-21
UniRef50_UPI0000E4A8EC Cluster: PREDICTED: similar to putative T... 100 2e-20
UniRef50_Q9BIB4 Cluster: Transcription initiation factor IIA sma... 100 3e-20
UniRef50_O74948 Cluster: Probable transcription initiation facto... 98 2e-19
UniRef50_Q5KEI0 Cluster: Transcription initiation factor iia sma... 87 2e-16
UniRef50_Q6C0S4 Cluster: Similar to wi|NCU09748.1 Neurospora cra... 86 5e-16
UniRef50_Q01FA7 Cluster: Transcription factor IIA small subunit;... 84 3e-15
UniRef50_P32774 Cluster: Transcription initiation factor IIA sma... 78 1e-13
UniRef50_Q4P891 Cluster: Putative uncharacterized protein; n=1; ... 54 5e-12
UniRef50_Q8SSH6 Cluster: TRANSCRIPTION INITIATION FACTOR IIA; n=... 48 1e-04
UniRef50_Q9XG36 Cluster: Transcription initiation factor IIA gam... 46 5e-04
UniRef50_Q5CQ44 Cluster: Transcription initiation factor IIA; n=... 35 1.2
UniRef50_A3JSH7 Cluster: Putative uncharacterized protein; n=2; ... 33 6.5
UniRef50_Q8WZQ6 Cluster: Putative uncharacterized protein G15G9.... 33 6.5
UniRef50_A6EG16 Cluster: Transcriptional regulator, MarR family ... 32 8.6
>UniRef50_P52657 Cluster: Transcription initiation factor IIA gamma
chain; n=29; Eumetazoa|Rep: Transcription initiation
factor IIA gamma chain - Homo sapiens (Human)
Length = 109
Score = 153 bits (372), Expect = 2e-36
Identities = 73/99 (73%), Positives = 85/99 (85%)
Frame = +3
Query: 138 LYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLN 317
LYRNTT+GN+LQESL ELIQ QITP LA++VLLQFDK+IN AL+ V++R+ F+ G LN
Sbjct: 5 LYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR-GSLN 63
Query: 318 TYRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXCDGKN 434
TYRFCDNVWTF+LNDVEFREV EL V+KVKIV CDGKN
Sbjct: 64 TYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102
>UniRef50_A2XZI2 Cluster: Transcription initiation factor IIA gamma
chain; n=4; Eukaryota|Rep: Transcription initiation
factor IIA gamma chain - Oryza sativa subsp. indica
(Rice)
Length = 106
Score = 113 bits (272), Expect = 3e-24
Identities = 52/98 (53%), Positives = 71/98 (72%)
Frame = +3
Query: 138 LYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLN 317
LYR +TIG L E+L E++ G ++P LA++VL+QFDKS+ +AL N VKS+++ K G L+
Sbjct: 6 LYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK-GHLH 64
Query: 318 TYRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXCDGK 431
TYRFCDNVWTF+L + F+ + V KVKIV CD K
Sbjct: 65 TYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSK 102
>UniRef50_Q1EMR2 Cluster: Transcription initiation factor; n=12;
Magnoliophyta|Rep: Transcription initiation factor -
Plantago major (Common plantain)
Length = 114
Score = 107 bits (256), Expect = 2e-22
Identities = 48/98 (48%), Positives = 71/98 (72%)
Frame = +3
Query: 138 LYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLN 317
LYR +TIG L E+L +++ G ++P LA++VL+QFDKS+ +AL + VKS+++ K G L+
Sbjct: 14 LYRRSTIGMCLTETLDQMVSSGVLSPELAIQVLIQFDKSMTEALESEVKSKVSIK-GHLH 72
Query: 318 TYRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXCDGK 431
TYRFCDNVWTF++ + + + + VE VKIV CD K
Sbjct: 73 TYRFCDNVWTFIVQNAQLKSEEGQETVETVKIVACDSK 110
>UniRef50_Q9NEX2 Cluster: Probable transcription initiation factor
IIA gamma chain; n=2; Caenorhabditis|Rep: Probable
transcription initiation factor IIA gamma chain -
Caenorhabditis elegans
Length = 113
Score = 103 bits (246), Expect = 4e-21
Identities = 43/98 (43%), Positives = 68/98 (69%)
Frame = +3
Query: 138 LYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLN 317
LYRNTT+G LQ++L + + I +L+ K++ FDKSIN+ L + K+++ F+A KL
Sbjct: 8 LYRNTTLGQALQKTLDDFVGDQMIPDSLSKKIMDSFDKSINKILPHKAKNKVNFRADKLR 67
Query: 318 TYRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXCDGK 431
YR+CDNVWTF++ ++ R+ E V+++KIV CDG+
Sbjct: 68 AYRYCDNVWTFIVEQIDLRDAVEGGTVDRLKIVACDGQ 105
>UniRef50_Q2UD99 Cluster: Transcription initiation factor IIA; n=17;
Ascomycota|Rep: Transcription initiation factor IIA -
Aspergillus oryzae
Length = 112
Score = 101 bits (243), Expect = 9e-21
Identities = 48/102 (47%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Frame = +3
Query: 129 HINLYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAG 308
+ LYR +++G +L ++L +LI G+I P LA+K+L FD+ I + L++ V++RLTFK G
Sbjct: 7 YYELYRGSSLGLSLTDTLDDLINDGRIEPQLAMKILSTFDRVITEVLADKVRARLTFK-G 65
Query: 309 KLNTYRFCDNVWTFMLNDVEFR-EVQELAXVEKVKIVXCDGK 431
L+TYRFCD VWTF++ DV F+ + Q +KVKIV C+ K
Sbjct: 66 HLDTYRFCDEVWTFLIKDVTFKLDNQTTVQADKVKIVSCNSK 107
>UniRef50_Q9W5B9 Cluster: Transcription initiation factor IIA
gamma-2 chain; n=12; Eukaryota|Rep: Transcription
initiation factor IIA gamma-2 chain - Drosophila
melanogaster (Fruit fly)
Length = 107
Score = 101 bits (243), Expect = 9e-21
Identities = 49/96 (51%), Positives = 66/96 (68%)
Frame = +3
Query: 141 YRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLNT 320
YR TT+G TLQ++L E+++ G IT +A VLL++DKSI+ AL + S ++F A +L T
Sbjct: 6 YRATTLGRTLQDTLDEMMERGDITKKIANLVLLRYDKSISTALKDHGTSNMSFTAERLET 65
Query: 321 YRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXCDG 428
+R CDNVWT +L D EFRE Q V+ VKIV C G
Sbjct: 66 FRCCDNVWTLILKDAEFREDQHSLKVDVVKIVACLG 101
>UniRef50_UPI0000E4A8EC Cluster: PREDICTED: similar to putative
TFIIA gamma chain, partial; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to putative TFIIA
gamma chain, partial - Strongylocentrotus purpuratus
Length = 84
Score = 100 bits (240), Expect = 2e-20
Identities = 47/75 (62%), Positives = 61/75 (81%)
Frame = +3
Query: 207 ITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQE 386
ITP LA+ VLL+FD++IN AL+N +K++++FK G LNTYRFCDNVWTF+LNDV+FR +
Sbjct: 4 ITPQLALNVLLKFDRAINDALANRLKNKISFK-GHLNTYRFCDNVWTFVLNDVDFRN-GD 61
Query: 387 LAXVEKVKIVXCDGK 431
V+KVKIV DGK
Sbjct: 62 FVTVDKVKIVAVDGK 76
>UniRef50_Q9BIB4 Cluster: Transcription initiation factor IIA small
chain homolog; n=2; Caenorhabditis|Rep: Transcription
initiation factor IIA small chain homolog -
Caenorhabditis elegans
Length = 139
Score = 100 bits (239), Expect = 3e-20
Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 2/100 (2%)
Frame = +3
Query: 138 LYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLN 317
LYR TT+G L ++L ++ G +T +LA KVL QFDKS+N+ +S K ++ F A +L
Sbjct: 6 LYRGTTLGQALDKTLEDMESEGLLTKSLASKVLQQFDKSMNKQISRLPKEKMNFCATQLL 65
Query: 318 TYRFCDNVWTFMLNDVEFREVQEL--AXVEKVKIVXCDGK 431
TYR+CDNVWTF+LN+V ++ Q ++K+K+V CDG+
Sbjct: 66 TYRYCDNVWTFILNNVTLKDPQRSFDEPIDKLKVVACDGR 105
>UniRef50_O74948 Cluster: Probable transcription initiation factor
IIA small chain; n=2; Ascomycota|Rep: Probable
transcription initiation factor IIA small chain -
Schizosaccharomyces pombe (Fission yeast)
Length = 107
Score = 97.9 bits (233), Expect = 2e-19
Identities = 48/98 (48%), Positives = 67/98 (68%)
Frame = +3
Query: 129 HINLYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAG 308
+ LYR + I +L ++L +LI G+I+P LA+KVL FDKS+ +AL+ V+SRLTFK G
Sbjct: 4 YYELYRRSRI--SLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFK-G 60
Query: 309 KLNTYRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXC 422
L+TYRFCD VWTF++ + FR E K++IV C
Sbjct: 61 HLDTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVAC 98
>UniRef50_Q5KEI0 Cluster: Transcription initiation factor iia small
chain, putative; n=1; Filobasidiella neoformans|Rep:
Transcription initiation factor iia small chain,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 127
Score = 87.4 bits (207), Expect = 2e-16
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Frame = +3
Query: 144 RNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLNTY 323
R+ IG L ++L ELI G I P LA++VL QFDKS+ + L VK++ T K G L+TY
Sbjct: 15 RHVHIGTALTDALDELITQGDIPPQLAMRVLQQFDKSLTECLQKGVKNKTTIK-GHLSTY 73
Query: 324 RFCDNVWTFMLNDVEFR-----EVQELAXVEKVKIVXCDGKNVDD 443
R CD+VWTF++ D +F+ E+ K+KIV C + D
Sbjct: 74 RLCDDVWTFVVKDPQFKMEGVGAGSEMVTGSKIKIVACKSGDAAD 118
>UniRef50_Q6C0S4 Cluster: Similar to wi|NCU09748.1 Neurospora crassa
NCU09748. 1 hypothetical protein; n=1; Yarrowia
lipolytica|Rep: Similar to wi|NCU09748.1 Neurospora
crassa NCU09748. 1 hypothetical protein - Yarrowia
lipolytica (Candida lipolytica)
Length = 111
Score = 86.2 bits (204), Expect = 5e-16
Identities = 42/106 (39%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = +3
Query: 129 HINLYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAG 308
+ N+YR ++IG L E+L ELI+ I P LA+KV+ FD+ + L N V++R++FK G
Sbjct: 6 YYNIYRVSSIGTALTEALDELIRDSTIPPQLALKVVEVFDRVMADTLRNDVRNRMSFK-G 64
Query: 309 KLNTYRFCDNVWTFMLNDVEFR-EVQELAXVEKVKIVXCDGKNVDD 443
+L+TYR ++VWTF++ V F+ + ++ +K+KIV C+ + D
Sbjct: 65 ELHTYRGLEDVWTFIIRRVVFKMDNNDVVNADKIKIVTCNARKAGD 110
>UniRef50_Q01FA7 Cluster: Transcription factor IIA small subunit;
n=2; Ostreococcus|Rep: Transcription factor IIA small
subunit - Ostreococcus tauri
Length = 113
Score = 83.8 bits (198), Expect = 3e-15
Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Frame = +3
Query: 132 INLYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGK 311
+ LYR +TIG +L ++L E++ G ++P++A+KVL +FD+ + + L K++ + K G+
Sbjct: 3 LELYRRSTIGMSLTDALDEMVNSGVLSPSIAMKVLFEFDRCVTRVL-QASKTKASIK-GQ 60
Query: 312 LNTYRFCDNVWTFMLND-----VEFREVQELAXVEKVKIVXCDGK 431
L+TYRFC NVWTF++ D + + V+ +K+V CDGK
Sbjct: 61 LHTYRFCGNVWTFIVEDAVVNVTDTDSTSRESRVKLLKVVACDGK 105
>UniRef50_P32774 Cluster: Transcription initiation factor IIA small
subunit; n=10; Saccharomycetales|Rep: Transcription
initiation factor IIA small subunit - Saccharomyces
cerevisiae (Baker's yeast)
Length = 122
Score = 78.2 bits (184), Expect = 1e-13
Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 14/115 (12%)
Frame = +3
Query: 129 HINLYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAG 308
+ LYR +TIGN+L ++L LI G+I +LA++VL FDK + + L + +S+LT K G
Sbjct: 6 YYELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVK-G 64
Query: 309 KLNTYRFCDNVWTFMLNDVEFR--------------EVQELAXVEKVKIVXCDGK 431
L+TY FCD+VWTF++ + + + Q + V+K++IV C+ K
Sbjct: 65 NLDTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIVACNSK 119
>UniRef50_Q4P891 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 155
Score = 53.6 bits (123), Expect(2) = 5e-12
Identities = 28/68 (41%), Positives = 41/68 (60%)
Frame = +3
Query: 129 HINLYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAG 308
+ LYR ++IG L ++L ELIQ G I P LA++VL +FDK+I L+ VK++ K
Sbjct: 11 YYELYRRSSIGMQLTDALDELIQSGHINPVLAMRVLNEFDKAIATNLAKNVKAKSQLKVR 70
Query: 309 KLNTYRFC 332
L + C
Sbjct: 71 LLPSALAC 78
Score = 39.5 bits (88), Expect(2) = 5e-12
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 306 GKLNTYRFCDNVWTFMLNDVEFR-EVQELAXVEKVKIVXC 422
G L YR C+ VWTF + + + + E+ V+KVKIV C
Sbjct: 108 GHLKDYRLCEEVWTFRVRNATLKLDNAEILDVDKVKIVAC 147
>UniRef50_Q8SSH6 Cluster: TRANSCRIPTION INITIATION FACTOR IIA; n=1;
Encephalitozoon cuniculi|Rep: TRANSCRIPTION INITIATION
FACTOR IIA - Encephalitozoon cuniculi
Length = 113
Score = 48.4 bits (110), Expect = 1e-04
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Frame = +3
Query: 141 YRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLNT 320
YR +G L++ + E + ++P +L FD S+ + V + ++FK GK++
Sbjct: 5 YRQLMVGKVLEKIVDEKVNANVLSPNQGKHILETFDLSVPIVFNKSVTNSMSFK-GKVDF 63
Query: 321 YRFCDNVWTFMLNDVEFREVQELAXVEKVKIVXCDGK-NVDDRR 449
Y D VW F E +V IV CD N+D R
Sbjct: 64 YNHVDGVWRFQTTGFVMSLNNEYFNAGEVNIVACDADINMDAGR 107
>UniRef50_Q9XG36 Cluster: Transcription initiation factor IIA gamma
chain; n=1; Guillardia theta|Rep: Transcription
initiation factor IIA gamma chain - Guillardia theta
(Cryptomonas phi)
Length = 128
Score = 46.4 bits (105), Expect = 5e-04
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +3
Query: 150 TTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLNTYRF 329
+T+G L E+L EL+ I + + ++F + +L +K + K GKL Y+
Sbjct: 9 STVGIELNETLHELLIANVINQDILNIIKMEFQVAFLSSLKKKIKDKPILK-GKLLHYQN 67
Query: 330 CDNVWTFMLNDVEFREVQ---ELAXVEKVKIVXCDGKN 434
CDNVW F + + E + + + +KIV D KN
Sbjct: 68 CDNVWMFFVTNPEIKNNNYSLPINLKKPLKIVAYDNKN 105
>UniRef50_Q5CQ44 Cluster: Transcription initiation factor IIA; n=1;
Cryptosporidium parvum Iowa II|Rep: Transcription
initiation factor IIA - Cryptosporidium parvum Iowa II
Length = 111
Score = 35.1 bits (77), Expect = 1.2
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +3
Query: 156 IGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKA-GKLNTYRFC 332
IG + L E + +I+P+ + K++ + +S ++ L VKS K G ++ Y
Sbjct: 14 IGKSFVVLLNEFVNDRRISPSQSTKMIENYIESCSEILKKHVKSGRKLKCEGAISHYNCI 73
Query: 333 DNVWTFMLNDVEFREVQELAXVEKVKIVXCDGKNV 437
D W ++ D+ + L V K K V GK V
Sbjct: 74 DGKWDLVIKDLVIFG-KSLGRV-KSKYVKVSGKEV 106
>UniRef50_A3JSH7 Cluster: Putative uncharacterized protein; n=2;
Alphaproteobacteria|Rep: Putative uncharacterized
protein - Rhodobacterales bacterium HTCC2150
Length = 198
Score = 32.7 bits (71), Expect = 6.5
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 174 ESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGK 311
E L E+ YG ++P AVKV+ +FDK Q + N L G+
Sbjct: 4 EKLREI--YGDVSPRAAVKVITRFDKHCRQFIENSTFLTLATSDGR 47
>UniRef50_Q8WZQ6 Cluster: Putative uncharacterized protein
G15G9.050; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein G15G9.050 - Neurospora crassa
Length = 285
Score = 32.7 bits (71), Expect = 6.5
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 207 ITPALAVKVLLQFDKSINQALS--NXVKSRLTF--KAGKLNTYRFCDNVWTFMLNDVE 368
+T L VL FD+ I Q L+ + V +++ GKL YR D++W + DVE
Sbjct: 121 LTQKLTDHVLTTFDRVIAQTLATHDEVINKIPVIKMKGKLKQYRLVDDIWKLWVEDVE 178
>UniRef50_A6EG16 Cluster: Transcriptional regulator, MarR family
protein; n=1; Pedobacter sp. BAL39|Rep: Transcriptional
regulator, MarR family protein - Pedobacter sp. BAL39
Length = 151
Score = 32.3 bits (70), Expect = 8.6
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +3
Query: 138 LYRNTTIGNTLQESLXELIQYGQITPALAVKVLLQFDKSINQALSNXVKSRLTFKAGKLN 317
+YR T++G+ + L ++GQ LA V++ F+ +N+ LS K+ L KLN
Sbjct: 76 IYRETSVGDKRSVKVY-LTEFGQEKRKLAKGVVIAFNDYLNEHLSTHEKNNLINTLQKLN 134
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 445,818,117
Number of Sequences: 1657284
Number of extensions: 7158032
Number of successful extensions: 15266
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 14833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15241
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40404161459
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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