Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J18
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_21312| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -2

Query: 598  DAKIXRRQTKMVNPSHLCRDLFMVPAYLXXXXXXXXXXXXXXFNVSEAKRGLVASVSVVR 419
            D K  RR+ + VNPS   R  FM+  +L                ++  +RG+  SV  + 
Sbjct: 2654 DDKESRRRRRAVNPSPRLRVRFMIKVFLKTEASFSVMNRTRHNILNMLRRGINVSVFHMM 2713

Query: 418  LVQN 407
            + +N
Sbjct: 2714 IGKN 2717


>SB_21312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 512

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 132 GKSITKTNWRLRNK*KISIAKRRVSPKISGNSFESLFI 245
           G SI+ T WRLR K  I I K+R +  +S    E + +
Sbjct: 143 GVSIS-TLWRLRKKYDIDIGKKRKARTVSEQELEGIIL 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,490,636
Number of Sequences: 59808
Number of extensions: 318344
Number of successful extensions: 702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)