Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_J15
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 229 1e-60
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 229 1e-60
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 89 2e-18
Z83116-11|CAM84819.1| 278|Caenorhabditis elegans Hypothetical p... 29 2.1
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 28 6.5
AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear recep... 27 8.6
AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormo... 27 8.6
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 229 bits (560), Expect = 1e-60
Identities = 105/175 (60%), Positives = 132/175 (75%), Gaps = 1/175 (0%)
Frame = +1
Query: 94 INCDVFFEEKFPDDSWESNWVYSEHPXKEFGKFKLTAGKFFSDPXDDKGLKTSEDARFYA 273
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 274 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEXKDMHGETPYEIMFGPD 450
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 451 ICGPXTXKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDMRS 615
ICGP T +VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID S
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGES 185
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 229 bits (560), Expect = 1e-60
Identities = 105/175 (60%), Positives = 132/175 (75%), Gaps = 1/175 (0%)
Frame = +1
Query: 94 INCDVFFEEKFPDDSWESNWVYSEHPXKEFGKFKLTAGKFFSDPXDDKGLKTSEDARFYA 273
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 274 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEXKDMHGETPYEIMFGPD 450
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 451 ICGPXTXKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDMRS 615
ICGP T +VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID S
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGES 185
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 89.0 bits (211), Expect = 2e-18
Identities = 53/141 (37%), Positives = 74/141 (52%), Gaps = 13/141 (9%)
Frame = +1
Query: 232 DKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKLEX 402
D GL AR +A++ K PF+ + VVQ+ +K E+ +CGGGYLK+ + +
Sbjct: 109 DLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDL 168
Query: 403 KDMHGETPYEIMFGPDICGPXTXKVHVIFSYKGKNHLIKKDIRCK----------DDVYT 552
+ +T Y IMFGPD CG T KVH+IF YK + + DD T
Sbjct: 169 ANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDHNT 227
Query: 553 HLYTLIVKPDNTYEVLIDMRS 615
HL+TL+VKP Y V +D +S
Sbjct: 228 HLFTLVVKPTGEYSVSVDGKS 248
>Z83116-11|CAM84819.1| 278|Caenorhabditis elegans Hypothetical
protein M01B2.12 protein.
Length = 278
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -2
Query: 513 EVVLTLVTEDYVYLXGSWTTDVRAEHNLIWSLSVHVLXLQFAVKDLEVSASTVNVLF 343
E+ + +V+ D+ L W+ +VRAE L ++ L F +D + S + L+
Sbjct: 36 EIRIQMVSADFGILLAEWSKEVRAEFTSAELLELYKKCLNFVKEDNKPSMVEITQLY 92
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 396 QFAVKDLEVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFRG 247
+ ++K+LE + L F S L D G + + E+T E IE RI G
Sbjct: 235 KLSIKELEANKDKKLKLLKFSSNLPDNGARVKLQVDEIT-EEIERRIING 283
>AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear receptor
NHR-115 protein.
Length = 391
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 474 LXGSWTTDVRAEHNLIWSLSVHVLXLQFAVKDLEVSASTVNVLFMF 337
L SW +D EH + L+ HV + L++ + V + FMF
Sbjct: 252 LDTSWMSDYPTEHVTRFMLTHHVYDFKIVESLLKLDPTDVELTFMF 297
>AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 115 protein.
Length = 391
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 474 LXGSWTTDVRAEHNLIWSLSVHVLXLQFAVKDLEVSASTVNVLFMF 337
L SW +D EH + L+ HV + L++ + V + FMF
Sbjct: 252 LDTSWMSDYPTEHVTRFMLTHHVYDFKIVESLLKLDPTDVELTFMF 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,782,823
Number of Sequences: 27780
Number of extensions: 317412
Number of successful extensions: 936
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -