Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J14
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13950.1 68416.m01761 expressed protein                             29   2.0  
At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing ...    28   4.7  
At5g51850.1 68418.m06428 expressed protein similar to unknown pr...    27   8.2  

>At3g13950.1 68416.m01761 expressed protein
          Length = 207

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 283 GVFSTFLPLFLFASFKFAIKFSQNENLVCRSVLIVFVDF 167
           G F     L + A+F FAI   Q+++ + R +L+++V F
Sbjct: 133 GTFMVVAVLCISAAFFFAIVLVQSDDQIIRYILLIYVGF 171


>At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing
           protein similar to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
           domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain
          Length = 639

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +2

Query: 104 IISNFTTKLTPKHRKVIFSNNKINENNQNGATNEIF--ILRKLYRKFKRGEEK----KRQ 265
           I   F+T ++ K   V+FS+ KI E  +     E F  ++    R+  +G ++    KR 
Sbjct: 396 IEDEFSTPVSTKRDLVVFSDVKIMEPPERSVEGECFDQLMAMENRQLSQGLDELGSCKRC 455

Query: 266 KCRKN 280
           KCRK+
Sbjct: 456 KCRKS 460


>At5g51850.1 68418.m06428 expressed protein similar to unknown
           protein (emb|CAB81354.1)
          Length = 590

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 241 TRRREKEAKMSKKHLHNQAAIPLAPAVFKKPQLRPMI-AEYDSKKKGVXNDLSDVVMIK 414
           TR  EKE K S  H  N ++      + +KP+  P+I  E  S+ +     L  + + K
Sbjct: 262 TRFSEKENKQSTSHKPNSSSSSRPEPIIQKPKPTPVILGEKQSQNRVKQRQLKPINLCK 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,236
Number of Sequences: 28952
Number of extensions: 260176
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)