Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_J07
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4)...    28   4.7  
At3g29300.1 68416.m03678 hypothetical protein                          27   8.2  

>At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4) /
           gibberellin-responsive protein 4 identical to SP|P46690
           Gibberellin-regulated protein 4 precursor {Arabidopsis
           thaliana}
          Length = 106

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 426 KTPKSSCECDPK-KYTSYHKNCGKLCNK 506
           K  +   ECD + K T YHK C   CNK
Sbjct: 44  KRTQCPSECDRRCKKTQYHKACITFCNK 71


>At3g29300.1 68416.m03678 hypothetical protein
          Length = 213

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
 Frame = +1

Query: 244 MNTKSTDKTAITLKLSFTSNDNASLVYDVLNVDXELKGSGVHREFQLKSNVLYIEFKSLX 423
           ++T +   T +   +S TSNDN S   ++ +       +GV +    K++  +  +    
Sbjct: 47  VSTAARTTTTLNQAISTTSNDNTS-PSNINSSSPNPLYTGVIQT-PTKTHYNHEPYLQAS 104

Query: 424 LKRLR-VAVNAILKNILLITKTV-ENFATK*PAMPEHTPAPTPSR 552
           L  ++   VN  + N + I+  +  N AT  P  P  TP  +PSR
Sbjct: 105 LDLIQETIVNDSVDNFIYISNPMYSNDATSKPTTPFETPESSPSR 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,360
Number of Sequences: 28952
Number of extensions: 223459
Number of successful extensions: 541
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)