BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P04_F_I23 (506 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 2e-37 SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 31 0.41 SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 30 1.3 SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 28 5.1 SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7 SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 27 8.9 SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9 SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 27 8.9 >SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 100 Score = 152 bits (368), Expect = 2e-37 Identities = 74/95 (77%), Positives = 83/95 (87%), Gaps = 2/95 (2%) Frame = +2 Query: 194 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTXDRFQMXI 367 + VR+ KV CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKT DR++M I Sbjct: 6 KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65 Query: 368 HXXVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 472 H +IDLHSPSEIVKQITSI+IEPGV VEVTIADA Sbjct: 66 HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100 >SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) Length = 584 Score = 31.5 bits (68), Expect = 0.41 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 199 CALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312 C A GLC P + ++ + GPSP + DP+ P Sbjct: 414 CLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451 >SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) Length = 2436 Score = 29.9 bits (64), Expect = 1.3 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +2 Query: 128 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 229 + + K Q E + IH + +T ++VRSLE+ C + Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696 >SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) Length = 1878 Score = 27.9 bits (59), Expect = 5.1 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = +1 Query: 268 GPSPHANQDPAYHHP 312 GP PH+ Q P HHP Sbjct: 1189 GPPPHSMQQPLLHHP 1203 >SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 437 Score = 27.5 bits (58), Expect = 6.7 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Frame = +1 Query: 163 YPPHQDHSYFTQCALAR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312 Y P +SY CA + +G + A+ + PH N DPA+ P Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319 >SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) Length = 1705 Score = 27.1 bits (57), Expect = 8.9 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = +2 Query: 59 FD*KVVYLGRNSTSNMAAAVXSGKD-IEKPQAEVSPIHRIRITLTSRNVRSLEK 217 FD K VYL RN+T+ AA+ S K+ I + QA +S + + +R + +L K Sbjct: 1396 FD-KKVYLLRNATTKAEAAIKSQKEQISRLQARLSAMEEANENV-NRKLDTLNK 1447 >SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4865 Score = 27.1 bits (57), Expect = 8.9 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = +2 Query: 86 RNSTSNMAAAVXSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLING 241 ++STSN + G PQ E +I T+ SR+ +EK + G Sbjct: 2668 QSSTSNFKKSTSMGNLNRNPQEESRAKRKISDTVVSRSAAIVEKTSSGFYKG 2719 >SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) Length = 1079 Score = 27.1 bits (57), Expect = 8.9 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = +2 Query: 83 GRNSTSNMAAAVXSGKDIEKPQAEVSPIHRIRITLTSRNVR 205 G S SN + + D+E PQ ++ + + I + S+N++ Sbjct: 54 GSGSGSNSGSGSGAAADLEDPQTPLTHLRPLEILVPSKNLK 94 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,062,049 Number of Sequences: 59808 Number of extensions: 308403 Number of successful extensions: 649 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 626 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 649 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1111677931 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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