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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I23
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             152   2e-37
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            31   0.41 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.3  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   5.1  
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)                    27   8.9  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               27   8.9  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  152 bits (368), Expect = 2e-37
 Identities = 74/95 (77%), Positives = 83/95 (87%), Gaps = 2/95 (2%)
 Frame = +2

Query: 194 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTXDRFQMXI 367
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKT DR++M I
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 368 HXXVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 472
           H  +IDLHSPSEIVKQITSI+IEPGV VEVTIADA
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 199 CALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312
           C  A  GLC P  +   ++ +  GPSP +  DP+   P
Sbjct: 414 CLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 128 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 229
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 268  GPSPHANQDPAYHHP 312
            GP PH+ Q P  HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = +1

Query: 163 YPPHQDHSYFTQCALAR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312
           Y P   +SY   CA  +   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
          Length = 1705

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 59   FD*KVVYLGRNSTSNMAAAVXSGKD-IEKPQAEVSPIHRIRITLTSRNVRSLEK 217
            FD K VYL RN+T+   AA+ S K+ I + QA +S +      + +R + +L K
Sbjct: 1396 FD-KKVYLLRNATTKAEAAIKSQKEQISRLQARLSAMEEANENV-NRKLDTLNK 1447


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +2

Query: 86   RNSTSNMAAAVXSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLING 241
            ++STSN   +   G     PQ E     +I  T+ SR+   +EK  +    G
Sbjct: 2668 QSSTSNFKKSTSMGNLNRNPQEESRAKRKISDTVVSRSAAIVEKTSSGFYKG 2719


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 83  GRNSTSNMAAAVXSGKDIEKPQAEVSPIHRIRITLTSRNVR 205
           G  S SN  +   +  D+E PQ  ++ +  + I + S+N++
Sbjct: 54  GSGSGSNSGSGSGAAADLEDPQTPLTHLRPLEILVPSKNLK 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,049
Number of Sequences: 59808
Number of extensions: 308403
Number of successful extensions: 649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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