Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I10
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)            30   1.4  
SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)            30   1.4  
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)            29   2.5  
SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07)                 29   3.3  
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)                 29   4.3  
SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)                 28   7.6  
SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_33731| Best HMM Match : Exonuc_X-T (HMM E-Value=6.2e-06)            28   7.6  

>SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
          Length = 460

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 392 VWMDLEMTGLDIENDHIMEIAC 457
           V  D E TGLD  ND I+++AC
Sbjct: 157 VMFDTETTGLDTSNDDIIQLAC 178


>SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
          Length = 415

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 392 VWMDLEMTGLDIENDHIMEIAC 457
           V  D E TGLD  ND I+++AC
Sbjct: 112 VMFDTETTGLDTSNDDIIQLAC 133


>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 392 VWMDLEMTGLDIENDHIMEIAC 457
           V  D E TGLD  ND I+++AC
Sbjct: 112 VMFDTETTGLDTSNDVIIQLAC 133


>SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 392 VWMDLEMTGLDIENDHIMEIAC 457
           V  D E TGLD  ND I+++AC
Sbjct: 20  VMFDTETTGLDTSNDVIIQLAC 41


>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 594 HNVXHXAFSPCWTLHQLFILFKVTSGRFIXISGPVATTFSCASVT 460
           H+     + P  T H LFI+F +TS   + IS  + TT +  ++T
Sbjct: 174 HHHHQHHYHPTATSHHLFIIFTITSTTIVIIS-TINTTSTVITIT 217


>SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07)
          Length = 546

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 165 YVCNVMLYNY*FHFFLCNDMQLRSTCKVYFTLKQLHTT 278
           YV N MLY     F++ N M   +   +Y T   L+TT
Sbjct: 17  YVTNAMLYTTNAMFYMTNAMLYMTNAMLYMTNAMLYTT 54


>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
          Length = 791

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/74 (24%), Positives = 38/74 (51%)
 Frame = +2

Query: 326 NLSMSPKIMMKKNTKVDIXQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDI 505
           NL +  ++ +++N K+ I  R++   + +  LDI ++HI  +   + +  +     G +I
Sbjct: 243 NLKLLERLSLREN-KIKILPRVIGQLVHLVTLDISHNHIENLPAGIDEFNIE----GNNI 297

Query: 506 XINLPEVTLNKMNN 547
              LPE  L+ + N
Sbjct: 298 A-ELPEKLLSSLKN 310


>SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)
          Length = 1200

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 205 FFCVMTCSYVQHVKSISH*NNYIQHDKIYVITKCNNVLNS*FVHVSENNDEKKY 366
           F+C M C +++ V+S S  N +   D + ++  C  +    + H  ++ND K++
Sbjct: 564 FYCFMVCVFLRSVRSNSLRNPFCLPDSVTML-YCALIKVFMYNHSGKSNDVKEF 616


>SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -3

Query: 360 FFIIIFGDMDKLRVKNVIALRDNVDFIMLYVIVLM 256
           FFII   D+D + + NV+ +   VD I++ VI+++
Sbjct: 76  FFIITIPDVDNIILINVVVI--TVDIIVIIVIIII 108


>SB_33731| Best HMM Match : Exonuc_X-T (HMM E-Value=6.2e-06)
          Length = 275

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 398 MDLEMTGLDIENDHIMEIACL 460
           +D+E TGL   ND I++IAC+
Sbjct: 30  LDVETTGLSKLNDRIVQIACV 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,606,281
Number of Sequences: 59808
Number of extensions: 340302
Number of successful extensions: 805
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)