Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H10
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51799| Best HMM Match : SET (HMM E-Value=0)                         30   1.4  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      28   5.6  
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     28   7.4  
SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)                   27   9.8  

>SB_51799| Best HMM Match : SET (HMM E-Value=0)
          Length = 503

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +2

Query: 239 MVVSRSDDAETEATLDVXTVTEGPVQPIKLTXMDVKSVISMRYAHTAIVAHVRNAANKSQ 418
           +++S SD++ETE T+D  T  EG ++    T  D +   S R + + +        N+++
Sbjct: 85  LLLSESDESETETTMD-DTRQEGEIEIFAATVTDEEKCTSSRSSDSIVCLEETAIPNENK 143

Query: 419 E 421
           +
Sbjct: 144 Q 144


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +2

Query: 212 AATITTPETMVVSRSDDAETEATLDVXTVTEGPVQPIKLTXMDVKSVISMRYAHTAI 382
           A++ + P+    S SD ++ +++    +  +G  QP+  T  DVK VI+M  A  A+
Sbjct: 798 ASSTSQPQKNQKSYSDPSQAQSS---PSPAQGTAQPVVKTEEDVKPVITMAPASQAV 851


>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 112  INRSIENKQNSNNVAKAAALNFIREHWSPVCGTCCHNYDPRDHG 243
            IN+S++ ++NSN++    A N    +W           D  D+G
Sbjct: 1324 INKSLDREKNSNHILTIRATNIAPPYWYGEASVGVQVLDVNDNG 1367


>SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)
          Length = 341

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 352 DIYAIRSHGYCSACAKCCKQISRSQFQGVT 441
           DI A RS GY S  A    Q+SRS   G+T
Sbjct: 111 DIPATRSPGYLSLSAFGSPQVSRSTTPGIT 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,221,117
Number of Sequences: 59808
Number of extensions: 382076
Number of successful extensions: 885
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)