Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G24
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)               31   0.81 
SB_36689| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)               29   3.3  
SB_31230| Best HMM Match : C1_1 (HMM E-Value=0.92)                     29   4.3  
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)                 28   5.7  
SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036)             28   5.7  
SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_29976| Best HMM Match : PT (HMM E-Value=5.9)                        28   7.6  
SB_10060| Best HMM Match : SAP (HMM E-Value=0.016)                     28   7.6  

>SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)
          Length = 601

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 370 SAWGIVFLVVALVVAGMGFYYF 435
           +AWG  F+V  L+VAGMG + F
Sbjct: 30  NAWGWSFIVPGLIVAGMGIFVF 51


>SB_36689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 24/76 (31%), Positives = 33/76 (43%)
 Frame = +1

Query: 232 ATLCVAQIEEIVNTVVGTRALGKAKPYGGTSPGIPSQSTTRRGVGISAWGIVFLVVALVV 411
           +T C      IV  +   RAL   KP+   +   P  S   RGV I+   + F+V A   
Sbjct: 186 STACGLSSGSIVTFMAFDRALSLHKPFFYKTFASPKLS---RGVCIATVCLCFVVAAFPY 242

Query: 412 AGMGFYYFSMCYPYFC 459
            G+G Y  +    YFC
Sbjct: 243 LGIGRYTVTHSGGYFC 258


>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
          Length = 491

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 419 IPATTSATTKNTIPHADIPTPRLVVLCEGIPGEVPPYGLAFPRALVPTTVF 267
           +P  +  T   T+P A  P P+L  +C    G     G   P  ++PT V+
Sbjct: 156 LPKPSENTVSTTVPAASEPMPKLTGICSLTSG-----GAMMPVVVLPTNVY 201


>SB_31230| Best HMM Match : C1_1 (HMM E-Value=0.92)
          Length = 174

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 429 IETHSCHYQCHD*EHNSPCRYSHTTPCGAL*RYTRGSASV 310
           +E+ S  + CHD + NSP R  H   C     Y    + V
Sbjct: 87  VESSSACFFCHDCQMNSPGRAHHCNLCAGKLNYESADSDV 126


>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
          Length = 1127

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 419 IPATTSATTKNTIPHADIPTPRLVVLCEGIPGEVPPYGLAFPRALVPT 276
           IP  + A TK TI  + +P P       G+P  +   G  +PR +VP+
Sbjct: 821 IPIVSMALTKTTIDDSMLPRPGPSFSAYGMPNGLMRIGSGYPR-VVPS 867


>SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036)
          Length = 362

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 410 TTSATTKNTIPHADIPTPRLVVLCEGIPGEVPPYGLAFPRALVPTTVFTI 261
           TTS  T  TIP     TP L+V    +P    P+ LA    L+  T  T+
Sbjct: 32  TTSPLTSPTIPFLATTTPLLMVTTSPLPSPTIPF-LATTTPLLMVTTSTL 80


>SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 261 NSKYGSGNQGSREG*TVRRHFPGYTFTEHH 350
           + K   G+ GS+    V R +PGY  TEHH
Sbjct: 398 SDKIPEGHHGSK----VTRKYPGYQLTEHH 423


>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 340 QSTTRRGVGISAWGIVFLVVALVVA-GMGFYYF 435
           Q+ T    GIS W I ++V+A++VA  +G + F
Sbjct: 139 QTATEGPGGISKWSITWIVIAVIVAILLGIFIF 171


>SB_29976| Best HMM Match : PT (HMM E-Value=5.9)
          Length = 342

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 380 PHADIPTPRLVVLCEGIPGEVPPYGLAFP 294
           P  D P+P  VV  EG PG   P GL  P
Sbjct: 70  PQQDTPSPP-VVASEGTPGSASPLGLDRP 97


>SB_10060| Best HMM Match : SAP (HMM E-Value=0.016)
          Length = 332

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 380 PHADIPTPRLVVLCEGIPGEVPPYGLAFP 294
           P  D P+P  VV  EG PG   P GL  P
Sbjct: 156 PQQDTPSPP-VVASEGTPGSASPLGLDRP 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,066,920
Number of Sequences: 59808
Number of extensions: 423994
Number of successful extensions: 1172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)