Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G07
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   1.6  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   3.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.4  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 242 EQKILLSLLMMNKHXXLNEVEADQKVPRKKRESRARVKVEVVDGH 376
           +QK++   + M K     ++ AD+K  +K R    + K ++   H
Sbjct: 61  DQKVMDYFIKMVKQKHKKDIRADKKALQKLRREVEKAKRDLSSVH 105


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 211 KKRGRPPAATRTKDSAKSSDDEQA 282
           K+R    AA R++D+ ++ +DE A
Sbjct: 141 KRRKNNEAAKRSRDARRAKEDEIA 164


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 148 VEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 279
           V++ G+ +P+    + ES E K    P  + + KDS+  S+DE+
Sbjct: 70  VQQAGK-KPENVKKEDESDEEK----PTTSFKLKDSSSDSEDER 108


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 35  PAINSHGNSGIACCKQ 82
           P +NSHG      CKQ
Sbjct: 191 PKVNSHGKIKTFKCKQ 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,657
Number of Sequences: 336
Number of extensions: 2279
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)