Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_E12
(356 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1) 27 3.4
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 27 4.5
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 27 4.5
SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26) 27 4.5
SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 27 4.5
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 27 4.5
SB_19925| Best HMM Match : TUDOR (HMM E-Value=2) 26 7.8
>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
Length = 364
Score = 27.5 bits (58), Expect = 3.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +2
Query: 146 WISCSKITILPLVSEX*AQEDYWNWPHASF 235
W++C K+ +LP+ ++ Y W + F
Sbjct: 136 WVNCDKVRLLPMRADEVGARVYARWTNGQF 165
>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 27.5 bits (58), Expect = 3.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +2
Query: 146 WISCSKITILPLVSEX*AQEDYWNWPHASF 235
W++C K+ +LP+ ++ Y W + F
Sbjct: 297 WVNCDKVRLLPMRADEVGARVYARWTNGQF 326
>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = +3
Query: 33 TMTKGTSSFGK---RRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 185
T K SS K R NK C CG S QKS C G + + HW+
Sbjct: 203 TTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 257
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = +3
Query: 33 TMTKGTSSFGK---RRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 185
T K SS K R NK C CG S QKS C G + + HW+
Sbjct: 29 TTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 83
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = +3
Query: 33 TMTKGTSSFGK---RRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 185
T K SS K R NK C CG S QKS C G + + HW+
Sbjct: 204 TTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 258
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = +3
Query: 33 TMTKGTSSFGK---RRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 185
T K SS K R NK C CG S QKS C G + + HW+
Sbjct: 190 TTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26)
Length = 245
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = +3
Query: 33 TMTKGTSSFGK---RRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 185
T K SS K R NK C CG S QKS C G + + HW+
Sbjct: 190 TTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = +3
Query: 33 TMTKGTSSFGK---RRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 185
T K SS K R NK C CG S QKS C G + + HW+
Sbjct: 121 TTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 175
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = +3
Query: 33 TMTKGTSSFGK---RRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 185
T K SS K R NK C CG S QKS C G + + HW+
Sbjct: 190 TTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = +3
Query: 33 TMTKGTSSFGK---RRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKL-RSYHWS 185
T K SS K R NK C CG S QKS C G + + HW+
Sbjct: 190 TTHKSPSSHPKTHSRENKQVQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_19925| Best HMM Match : TUDOR (HMM E-Value=2)
Length = 263
Score = 26.2 bits (55), Expect = 7.8
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +2
Query: 146 WISCSKITILPLVSEX*AQEDYWNWPHASF 235
W++C K+ +LP+ + Y W + F
Sbjct: 93 WVNCDKVRLLPMRVDEVGARVYARWTNGQF 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,899,680
Number of Sequences: 59808
Number of extensions: 162813
Number of successful extensions: 423
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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