Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_D11
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12300.1 68416.m01535 expressed protein                            281   4e-76
At4g35730.1 68417.m05071 expressed protein  contains Pfam profil...    31   0.89 
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa...    29   2.1  
At2g32450.1 68415.m03964 calcium-binding EF hand family protein ...    29   3.6  
At1g05150.1 68414.m00518 calcium-binding EF hand family protein ...    29   3.6  
At4g38340.1 68417.m05420 RWP-RK domain-containing protein simila...    27   8.3  

>At3g12300.1 68416.m01535 expressed protein
          Length = 190

 Score =  281 bits (688), Expect = 4e-76
 Identities = 123/159 (77%), Positives = 146/159 (91%)
 Frame = +3

Query: 129 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYIT 308
           MFKNTFQSGFLSILYS+GSKPLQIWDK+V +GH+KR  D+DIQS VLE+VG+N+ +TYIT
Sbjct: 1   MFKNTFQSGFLSILYSLGSKPLQIWDKEVVDGHVKRCHDDDIQSNVLEVVGSNIQSTYIT 60

Query: 309 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRXFRASNYQSTTRVKPFICT 488
           CPAD   TLGIKLPFLV+++K++KKYF+FE+Q+LDDKNVRR FRASN+Q+ TRVKP+ICT
Sbjct: 61  CPADLSATLGIKLPFLVLVVKDMKKYFSFEIQILDDKNVRRRFRASNFQAVTRVKPYICT 120

Query: 489 MPMRLDEGWNQIQFNLADFTRRAYGTNYVETLRVQIHAN 605
           MP+++DEGWNQIQ NLAD TRRAYGTNY ETLRVQIHAN
Sbjct: 121 MPLKMDEGWNQIQLNLADLTRRAYGTNYAETLRVQIHAN 159


>At4g35730.1 68417.m05071 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 430

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 251 YTKPGARNRGNERQYHVHNMPGGSKED 331
           Y KPGA NRG  R+ H +N PG ++ D
Sbjct: 296 YAKPGAENRGMGRR-HSYNNPGINESD 321


>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
           family protein contains Pfam PF03126: Plus-3 domain;
           contains Pfam PF02201: BAF60b domain of the SWIB
           complex; contains Pfam PF00628: PHD-finger domain;
           contains Prosite Zinc finger, C3HC4 type (RING finger),
           signature; similar to CPRF interacting protein
           (GI:9588690) [Petroselinum crispum]
          Length = 571

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 237 SSLCA-HCELFCPKFAKVCCLCCKESI 160
           S +C  H    C K  K+CCLCC  ++
Sbjct: 63  SYICMWHSCYLCKKTPKLCCLCCSHAV 89


>At2g32450.1 68415.m03964 calcium-binding EF hand family protein low
           similarity to O-linked GlcNAc transferase [Homo sapiens]
           GI:2266994; contains Pfam profiles PF00036: EF hand,
           PF00515: TPR Domain
          Length = 802

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 344 LYSKGLLWIRRACYVRGTDVRSHDFEHQALYIV 246
           L+ + L+  +RAC ++ TDVR H      LY++
Sbjct: 244 LFKEALVSFKRACELQPTDVRPHFKAGNCLYVL 276


>At1g05150.1 68414.m00518 calcium-binding EF hand family protein low
           similarity to O-linked GlcNAc transferase [Homo sapiens]
            GI:2266994; contains Pfam profiles PF00036: EF hand,
           PF00515: TPR Domain
          Length = 808

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 344 LYSKGLLWIRRACYVRGTDVRSHDFEHQALYIV 246
           L+ + L+  +RAC ++ TDVR H      LY++
Sbjct: 249 LFKEALVSFKRACELQPTDVRPHFKAGNCLYVL 281


>At4g38340.1 68417.m05420 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 767

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 574 T*LVP*ALRVKSAKLNCIWFQPSSNLMGIVQMNGLTLVVDW 452
           T +VP +L+V S+  +    + +S L GI   +GL L V W
Sbjct: 279 TSIVPASLKVTSSSSSSSRTEVASILQGICSSHGLPLAVTW 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,126,206
Number of Sequences: 28952
Number of extensions: 258495
Number of successful extensions: 634
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)