Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C12
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)                 26   7.0  
SB_14394| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.81)            26   7.0  

>SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)
          Length = 465

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 191 FKNIIYLCEGVLMTSHSFTTIKVXYSXNIFLIIC 90
           F N + + E +L+ + +   +KV Y   IF+I C
Sbjct: 311 FTNYVMVIETILVLNMTGYNVKVVYITKIFIIHC 344


>SB_14394| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.81)
          Length = 282

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 191 FKNIIYLCEGVLMTSHSFTTIKVXYSXNIFLIIC 90
           F N + + E +L+ + +   +KV Y   IF+I C
Sbjct: 115 FTNYVMVIETILVLNMTGYNVKVVYITKIFIIHC 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,339,088
Number of Sequences: 59808
Number of extensions: 90403
Number of successful extensions: 151
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)