Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C08
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)                29   2.5  
SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               29   4.3  
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)           29   4.3  
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
          Length = 333

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -1

Query: 223 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 116
           L++P  K+F++ CV PG++ R P+  PS++    +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241


>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 488 LPALMSFSTTRTHPKAIKQKFRMWKQIK 405
           LP  M   T +T PK + Q FR +KQ++
Sbjct: 40  LPPNMRLQTPKTGPKGVIQDFRRYKQLE 67


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 228 APSAGPMLPVAAVTRRTSRTVPHTYPSSV 314
           AP+  P  P AA      R+VP T PSSV
Sbjct: 112 APAPAPAAPSAAAAPAPVRSVPSTSPSSV 140


>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
          Length = 671

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 184 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 98
           + P S P  PS +P+ +   GSP  QP++
Sbjct: 77  LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -1

Query: 271 LVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 149
           LV A T ++ PAD +L+ SPSR      CV    T  C +G
Sbjct: 751 LVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 252  PVAAVTRRTSRTVPHTYPSSVTLNSEPRCC*AQPTIQL 365
            PVAA+  +T+++VPHT  +  T    P  C  Q T  L
Sbjct: 2027 PVAALATQTTQSVPHTMGNPTT--PRPPSCLTQQTSTL 2062


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,700,216
Number of Sequences: 59808
Number of extensions: 445426
Number of successful extensions: 1247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)