Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_B17
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13110.1 68414.m01520 cytochrome P450 71B7 (CYP71B7) identica... 34 0.095
At1g13090.1 68414.m01518 cytochrome P450 71B28, putative (CYP71B... 33 0.22
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 32 0.38
At3g26210.1 68416.m03270 cytochrome P450 71B23, putative (CYP71B... 32 0.38
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote... 32 0.38
At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B... 31 0.51
At4g18770.1 68417.m02773 myb family transcription factor (MYB98)... 29 2.7
At3g18870.1 68416.m02397 mitochondrial transcription termination... 29 2.7
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 29 2.7
At5g63890.2 68418.m08022 histidinol dehydrogenase, putative / HD... 29 3.6
At5g63890.1 68418.m08021 histidinol dehydrogenase, putative / HD... 29 3.6
At1g48150.1 68414.m05374 MADS-box protein (AGL74 ) similar to GB... 29 3.6
At5g49190.1 68418.m06088 sucrose synthase / sucrose-UDP glucosyl... 28 6.2
At3g53180.1 68416.m05860 glutamine synthetase, putative similar ... 28 6.2
At2g24400.1 68415.m02915 auxin-responsive protein, putative / sm... 28 6.2
At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3... 27 8.2
>At1g13110.1 68414.m01520 cytochrome P450 71B7 (CYP71B7) identical
to (SP:Q96514) cytochrome P450 71B7 [Arabidopsis
thaliana]; PF|00067 Cytochrome P450 family. ESTs
gb|T44875, gb|T04814, gb|R65111, gb|T44310 and gb|T04541
come from this gene; identical to cDNA cytochrome P450
GI:1523795, ATCYP71B7
Length = 504
Score = 33.9 bits (74), Expect = 0.095
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -3
Query: 543 FNVFRD--LWSNPHEVNIQT-LDISLEMRILVKELLPFSEWVFFCP 415
+++ RD LW+NP E N LD S++ R L ELLPF CP
Sbjct: 402 YSIARDPKLWTNPDEFNPDRFLDSSIDYRGLNFELLPFGSGRRICP 447
>At1g13090.1 68414.m01518 cytochrome P450 71B28, putative (CYP71B28)
Identical to Cytochrome P450 (SP:Q9SAE3) [Arabidopsis
thaliana]; strong similarity to gb|X97864 cytochrome
P450 from Arabidopsis thaliana and is a member of the
PF|00067 Cytochrome P450 family. ESTs gb|N65665,
gb|T14112, gb|T76255, gb|T20906 and gb|AI100027 come
from this gene
Length = 490
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 525 LWSNPHEVNIQT-LDISLEMRILVKELLPFSEWVFFCP 415
LW+NP E N LD S++ R L ELLPF CP
Sbjct: 404 LWTNPDEFNPDRFLDSSIDYRGLNFELLPFGSGRRICP 441
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 454 LNQYPHFKTNIQGLNIHFMRITPKVPKDVEIVPLLCY 564
L +P TNI LN+ + I +VP +E + LLCY
Sbjct: 827 LKTFPDISTNISDLNLSYTAI-EEVPLSIEKLSLLCY 862
>At3g26210.1 68416.m03270 cytochrome P450 71B23, putative (CYP71B23)
Identical to Cytochrome P450 71B23
(SP:Q9LTM0)[Arabidopsis thaliana];contains Pfam profile:
PF00067 cytochrome P450
Length = 501
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 528 DLWSNPHEVNIQT-LDISLEMRILVKELLPFSEWVFFCP 415
DLW NP E + +D S++ R L ELLPF CP
Sbjct: 406 DLWENPEEFKPERFVDSSVDYRGLNFELLPFGSGRRICP 444
>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
kinase, putative
Length = 691
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 478 TNIQGLNIHFMRITPKVPKDVEIVPLL 558
T++ GL +HF +T +PKD+ +PLL
Sbjct: 92 TSLTGLYLHFNSLTGHIPKDISNLPLL 118
>At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B29)
strong similarity to gb|X97864 cytochrome P450 and
identical to Cytochrome P450 71B29
(SP:Q9SAE4)[Arabidopsis thaliana];PF|00067 Cytochrome
P450 family
Length = 490
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 525 LWSNPHEVNIQT-LDISLEMRILVKELLPFSEWVFFCP 415
LW+NP E N LD S++ + L ELLPF CP
Sbjct: 404 LWTNPDEFNPDRFLDSSIDYKGLNFELLPFGSGRRICP 441
>At4g18770.1 68417.m02773 myb family transcription factor (MYB98)
identical to transcription factor (MYB98) GI:15375282
from [Arabidopsis thaliana]
Length = 427
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 559 CYSTDG---RAPSGSSTKPFLISQLSAKTXTSLW 651
C S D RA S + TKPFL +LS+ + +S W
Sbjct: 174 CVSADNDCYRATSFNKTKPFLTRKLSSSSSSSSW 207
>At3g18870.1 68416.m02397 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 274
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 441 FSEWVFFCP-IFEPTVQLFRIEPVFE 367
F VF CP +F PT + +++PVF+
Sbjct: 82 FPRLVFLCPQLFSPTFDISKLDPVFD 107
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 220 EWWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLE 357
EWW L + I IT S +++L I+ RP PP E
Sbjct: 494 EWWDANVLTNGEYGEITDGTITESHLKIEKLTHYIEHPRPIEPPAE 539
>At5g63890.2 68418.m08022 histidinol dehydrogenase, putative / HDH,
putative strong similarity to SP|P24226 Histidinol
dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH)
{Brassica oleracea var.capitata}; contains Pfam profile
PF00815: histidinol dehydrogenase
Length = 466
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 364 GFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKDVE 543
G+ ++ LDS+LK+ + E + L Y I+GL+ H +T ++ KD+E
Sbjct: 403 GYARMYSGVSLDSFLKFMTVQSLTEEGLRNLGPYVATMAEIEGLDAHKRAVTLRL-KDIE 461
>At5g63890.1 68418.m08021 histidinol dehydrogenase, putative / HDH,
putative strong similarity to SP|P24226 Histidinol
dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH)
{Brassica oleracea var.capitata}; contains Pfam profile
PF00815: histidinol dehydrogenase
Length = 452
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 364 GFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKDVE 543
G+ ++ LDS+LK+ + E + L Y I+GL+ H +T ++ KD+E
Sbjct: 389 GYARMYSGVSLDSFLKFMTVQSLTEEGLRNLGPYVATMAEIEGLDAHKRAVTLRL-KDIE 447
>At1g48150.1 68414.m05374 MADS-box protein (AGL74 ) similar to
GB:CAA73304 from [Arabidopsis thaliana] (Gene 215 (1),
11-17 (1998)); contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); PMID: 12837945
Length = 323
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 434 NGYSSAQYLSQLSNCFELNPYLKPTPSNGGAKGLRFLMRSLSSF 303
N YSS + SQ++ CF+ NP S + R+L+ S F
Sbjct: 193 NSYSSLEPSSQVTTCFDQNPVFS-VGSESSSDQSRYLVNEDSGF 235
>At5g49190.1 68418.m06088 sucrose synthase / sucrose-UDP
glucosyltransferase (SUS2) nearly identical to SP|Q00917
Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
glucosyltransferase) {Arabidopsis thaliana} (SUS2);
contains Pfam profile: PF00862 sucrose synthase
Length = 807
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -1
Query: 434 NGYSSAQYLSQLSNCFE-LNPYL-KPTPSNGGAKGLRFLMRSLSS 306
NG+++ YL +L FE N L +PT S+ G++FL R LSS
Sbjct: 123 NGHANGDYLLELD--FEPFNATLPRPTRSSSIGNGVQFLNRHLSS 165
>At3g53180.1 68416.m05860 glutamine synthetase, putative similar to
glutamine synthetase (glutamate--ammonia ligase)
[Bacillus subtilis] SWISS-PROT:P12425
Length = 845
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +1
Query: 427 YPFAERQKFLNQ-YPH----FKTNIQGLNIHFMRITPKVPKDVEIVPLLCYSTDGRA 582
YPF++ FL+ YP F + L++H M + K D+ + + +STDG A
Sbjct: 275 YPFSKEASFLSSVYPQVYLDFGLAVPKLSVHGMVSSVKELLDLASIKKVMFSTDGYA 331
>At2g24400.1 68415.m02915 auxin-responsive protein, putative / small
auxin up RNA (SAUR_D) similar to SAUR-AC-like protein
(small auxin up RNA) (GI:4455308) from [Arabidopsis
thaliana]; auxin-induced protein TGSAUR22 (GI:10185820)
[Tulipa gesnerian]
Length = 178
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -1
Query: 356 SNGGAKGLRFLMRSLSSFTIVSLKVISKGLMLVS 255
S GG+K ++FL R+L SFT V+ + KG + VS
Sbjct: 42 SGGGSKSIKFLKRTL-SFTDVT--AVPKGYLAVS 72
>At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3)
similar to auxin transport protein [Arabidopsis
thaliana] gi|5817301|gb|AAD52695
Length = 640
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 203 LSSTWRSGGDRPNLSRNRIPASNPSRSLSVKRW*KNLKNASRNEDLSPLHWRVLA 367
L S GG + +N PAS +R + + W K ++N + L L W ++A
Sbjct: 456 LQSKTGLGGAEASQRKNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVA 510
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,851
Number of Sequences: 28952
Number of extensions: 302760
Number of successful extensions: 892
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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