Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F08
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
 Frame = +2

Query: 392  LDNPKKKSKMWISIAEELKSLN---VXVTADQVXWKINALTKKYKDCIDN----GQXAVS 550
            LDN  +K  ++  IA+ L++ +      +  QV  KI  L K YK+  DN    G+   +
Sbjct: 921  LDNCSRKRSVFEKIAKRLEAESEGRFTRSYQQVSEKIKQLKKAYKNVKDNNNLSGRSRKT 980

Query: 551  FKYFNXMHQIL 583
            FK+F+ M +++
Sbjct: 981  FKHFDQMDRVM 991


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/79 (25%), Positives = 33/79 (41%)
 Frame = +2

Query: 368  LYXTKIHMLDNPKKKSKMWISIAEELKSLNVXVTADQVXWKINALTKKYKDCIDNGQXAV 547
            L  T   +LD+  +    + S   EL  +   VT DQV  ++  + K    C+DN +   
Sbjct: 2298 LISTTAPILDDTNEGCGRFTSALVELLGIRKSVTMDQVKSQLQTVMKVKLSCLDNDRLDD 2357

Query: 548  SFKYFNXMHQILXRYNDNG 604
              K    ++  L R  + G
Sbjct: 2358 VRKVCAAIYAYLERSLEGG 2376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,597,289
Number of Sequences: 59808
Number of extensions: 326004
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)