Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F08
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54390.1 68416.m06013 expressed protein similar to 6b-interac...    33   0.22 
At3g14180.1 68416.m01792 expressed protein similar to 6b-interac...    29   3.5  
At5g60220.1 68418.m07548 senescence-associated family protein si...    28   4.7  
At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containi...    28   4.7  
At3g02940.1 68416.m00289 myb family transcription factor (MYB107...    28   6.1  

>At3g54390.1 68416.m06013 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 296

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = +2

Query: 266 NHNQNISQQEXSDVNEMNXQNIIWTKNSTIMLLNLYXTKIHMLDNPKKKSKMWISIAEEL 445
           NH++++ +   S V     +   W++ +   LL  Y +K  + +  K K + W  +A+ +
Sbjct: 15  NHDESLKKPSASSVVVDRLKRDEWSEGAVSTLLEAYESKWVLRNRAKLKGQDWEDVAKHV 74

Query: 446 KSLNVXV----TADQVXWKINALTKKYK 517
            S         T  Q   KI ++ K+Y+
Sbjct: 75  SSRATHTKSPKTQTQCKNKIESMKKRYR 102


>At3g14180.1 68416.m01792 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 443

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
 Frame = +2

Query: 335 WTKNSTIMLLNLYXTKIHMLDNPKKKSKMWISIAEELKSL----NVXVTADQVXWKINAL 502
           W++ +T +L++ +  +   L     K K W  +AE + S      +  T  Q   +I+ +
Sbjct: 84  WSEAATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSSREDYGKIPKTDIQCKNRIDTV 143

Query: 503 TKKYKD---CIDNGQXAVSFKYFNXMHQIL 583
            KKYK     I NG     + +F+ + +++
Sbjct: 144 KKKYKQEKVRIANGGGRSRWVFFDKLDRLI 173


>At5g60220.1 68418.m07548 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 327

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 384 ILVXYKFSNIIVEFFVQMIFXLFIS 310
           ILV +KF  I+V+FF  ++F L  +
Sbjct: 279 ILVIFKFKEILVQFFFGIVFLLLFN 303


>At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 706

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 22/56 (39%), Positives = 28/56 (50%)
 Frame = +2

Query: 410 KSKMWISIAEELKSLNVXVTADQVXWKINALTKKYKDCIDNGQXAVSFKYFNXMHQ 577
           KSK  I + E  KSL V    D V + I+ LT     C  +GQ  + F YFN M +
Sbjct: 492 KSKEAIDLFE--KSLKVGFRPDSVTF-ISVLTA----CTHSGQLDLGFHYFNMMQE 540


>At3g02940.1 68416.m00289 myb family transcription factor (MYB107)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 321

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +2

Query: 179 ENIHNNVAVLAILDSQP-NLYKPNMPVPTYNHNQNISQQEXSDVNEMNXQNIIWTKNSTI 355
           EN ++    L+ +D QP + +   + V  Y H+QN      S   + + +  +  KN  I
Sbjct: 210 ENPYDQTQGLSHIDDQPLDSFSSPIRVVAYQHDQNFIPPLISTSPDESKETQMMVKNKEI 269

Query: 356 MLLNLYXTKIHMLDNPKKKSKMWISIAEE 442
           M  N + +         +  + W  I ++
Sbjct: 270 MKYNDHTSNPSSTSTFTQDHQPWCDIIDD 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,054
Number of Sequences: 28952
Number of extensions: 226177
Number of successful extensions: 476
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)