Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P07
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   3.6  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.7  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.3  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   8.3  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   8.3  

>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 527 LCGI*FC-FFSLHDHWSVRVD 468
           LC + FC FF +HD+WS R D
Sbjct: 554 LCEL-FCYFFRIHDYWSRRFD 573


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 556 FFSYTPSSNFFVAYNFVSFLFMIIGLSVLMEMTTARGSAAYG 431
           FF ++    FFV+YN++   +  +  S L   T  R SA+ G
Sbjct: 453 FFGFSLLIVFFVSYNYIIDSYQHMAPSALAAATLVRYSASGG 494


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 556 FFSYTPSSNFFVAYNFVSFLFMIIGLSVLMEMTTARGSAAYG 431
           FF ++    FFV+YN++   +  +  S L   T  R +A+ G
Sbjct: 448 FFGWSLLFVFFVSYNYIIDSYQKLAASALAAATLVRYAASGG 489


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 283  SRTAPASNNCTA-RSCRVDVMIFFNLTLIIQCYAVSGFVV 167
            S+  P    CTA R C+V  +   +LT ++ C  ++ F+V
Sbjct: 965  SQFEPLIFKCTASRICKVREIASLSLTCLLDCSKMTTFIV 1004


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
 Frame = +3

Query: 114 FL*RINKFSVY*NKV---FFKTTKPLTA*HWIINVKLKNIMTSTLQDLAVQLFDAGAVRL 284
           FL RI+  SV+   V   +F  +   +A +   ++    +  ST QD+  Q+F+     L
Sbjct: 289 FLGRISSLSVFTQDVASRYFSNSTERSAQNISSSISSLKLTMSTYQDVLFQIFNT----L 344

Query: 285 EDIEAKVGRRTPIYFDLRVIVSHPKLMVAVSH---QLEKLIKDVHHDMI-CGVPYAALPL 452
                 +      +F + V  +H +  + V+H     +  + +  H +     P+  +  
Sbjct: 345 IRTSTSLRESVLDFFAMVVNANHKRQSIQVNHFDITSDACMLNFSHVLSRLSEPFLDIGC 404

Query: 453 AVVISINTD----RPMIMKRKETKLYATKKLLEGVYEK 554
           + +  +  +     P +  ++ETKL A +K  E  Y K
Sbjct: 405 SKIDRVQVEYFRRNPRVDIKEETKLNADQKASESFYSK 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,947
Number of Sequences: 5004
Number of extensions: 54294
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)