Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_P04
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 89 8e-19
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 88 1e-18
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 74 2e-14
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 72 1e-13
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 64 3e-11
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 38 0.003
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 28 2.0
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 6.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 6.2
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 26 8.2
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 89.0 bits (211), Expect = 8e-19
Identities = 37/68 (54%), Positives = 47/68 (69%)
Frame = +3
Query: 537 EVLTFTMKEPVGVCGQIIPWNYPIPMMSWKIAPALAAGCTVVLKPAEQTPLTXXXXXXXX 716
E L + + P+GVCGQI+PWNYP+ M WKIAPALAAG +++K AE TPL+
Sbjct: 145 EKLAYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLLYFATLV 204
Query: 717 KEAGFPPG 740
+EAGFP G
Sbjct: 205 EEAGFPKG 212
Score = 56.8 bits (131), Expect = 4e-09
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +1
Query: 730 FHRGXVNVVPGYGATAGGALTHHPDVDKIAFTGSTEVGRIILXAASAVNLK 882
F +G VN++ G G AG + HP +DKIAFTGST+VG +I+ +A NLK
Sbjct: 209 FPKGVVNIISGLGTVAGSYMAKHPGIDKIAFTGSTKVG-VIVQQLAASNLK 258
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 425 GKP-VKQSEEEVYFSASVLRYYAGKADKILGNTIPS 529
GKP V + +V + ++LRY AG ADKI G IP+
Sbjct: 107 GKPLVSNARGDVDGTIALLRYCAGWADKIYGQVIPT 142
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 88.2 bits (209), Expect = 1e-18
Identities = 37/64 (57%), Positives = 45/64 (70%)
Frame = +3
Query: 549 FTMKEPVGVCGQIIPWNYPIPMMSWKIAPALAAGCTVVLKPAEQTPLTXXXXXXXXKEAG 728
+T EP+GVCGQIIPWN+P M +WKIAPA+A G T++LK AE TPL+ E G
Sbjct: 155 YTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLSALCLTKFVPECG 214
Query: 729 FPPG 740
FPPG
Sbjct: 215 FPPG 218
Score = 60.1 bits (139), Expect = 4e-10
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +1
Query: 730 FHRGXVNVVPGYGATAGGALTHHPDVDKIAFTGSTEVGRIILXAASAVNLK 882
F G +NV+ G G G A++ H D+DK+AFTGST VGR+++ AA++ NLK
Sbjct: 215 FPPGVINVLSGDGRRCGNAISSHMDIDKVAFTGSTGVGRMVMRAAASSNLK 265
Score = 40.3 bits (90), Expect = 4e-04
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +3
Query: 156 LFINNXWVXAVSKKTFPXINPQXETVITQVAEGXKADIDLAVAAAKKAFH-----RLFPM 320
LFINN V +V +P E +I +VA+ + D+D+AV A+ AF R F
Sbjct: 25 LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSS 84
Query: 321 AYHGRFSTR 347
A GR +R
Sbjct: 85 AQRGRCLSR 93
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 425 GKPVKQSEEEVYFSASVLRYYAGKADKILGNTIPSE-RRSPYVHHE--GTCRSV 577
GK + + +V +A RYY G ADK G TI ++ +R Y HE G C +
Sbjct: 114 GKSITLARGDVQAAADCFRYYGGWADKDYGQTIETDIKRFAYTRHEPIGVCGQI 167
Score = 29.1 bits (62), Expect = 0.88
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 313 SPWRTMDASQRGXXXXXXXXXXXSQSRYLAELETLELWKT 432
+PWR ++QRG YLA +ETL+ K+
Sbjct: 77 APWRKFSSAQRGRCLSRLADCIEQNLEYLASIETLDNGKS 116
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 74.1 bits (174), Expect = 2e-14
Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 3/197 (1%)
Frame = +3
Query: 159 FINNXWVXAVSKKTFPXINPQXETVITQVAEGXKADIDLAVAAAKKAFHRLFPMAYHGRF 338
+I WV A S KTF NP + V + + A+ A +AF ++Y
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAF-----LSYRNS- 80
Query: 339 STRPPIA*ASRTSRIPI*IPS*ARDFRTVEN--R*NNPKKKYTFPQACSDITLEKRTRY* 512
+ A R + + T+EN + K + + D + R
Sbjct: 81 DIKERYAILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRIS 140
Query: 513 -EIPFLQNGEVLTFTMKEPVGVCGQIIPWNYPIPMMSWKIAPALAAGCTVVLKPAEQTPL 689
+ N + T+K+PVGV G I PWN+P M++ K+ ALAAGCTVV++PA +TP
Sbjct: 141 GDSSMSSNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPF 200
Query: 690 TXXXXXXXXKEAGFPPG 740
T + AG P G
Sbjct: 201 TALALAKLAERAGVPAG 217
Score = 33.5 bits (73), Expect = 0.041
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 739 GXVNVVPGYGATAGGA-LTHHPDVDKIAFTGSTEVGRIILXAASA 870
G +N+V + G LT +P + K++FTGST VG+I+ +S+
Sbjct: 217 GVLNMVTANSPSEHGIELTTNPLIRKVSFTGSTNVGKILAKQSSS 261
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 72.1 bits (169), Expect = 1e-13
Identities = 61/205 (29%), Positives = 84/205 (40%), Gaps = 10/205 (4%)
Frame = +3
Query: 156 LFINNXWVXAV--SKKTFPXINPQXETVITQVAEGXKADIDLAVAAAKKAFHRLFPMAYH 329
LFI+ +V + + K P INP E +I A D+D AV A F +
Sbjct: 23 LFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGIWAKWP 82
Query: 330 G--RFSTRPPIA*ASRTSRIPI*IPS*ARDFRTVENR*NNPKKKYTFPQACSDI------ 485
G R IA R R + T+ P + +C+D+
Sbjct: 83 GKQRGLVLRKIAKMMREKRELL------AGIDTINCGKPTPYALFDI-DSCADMFEYYAE 135
Query: 486 TLEKRTRY*EIPFLQNGEVLTFTMKEPVGVCGQIIPWNYPIPMMSWKIAPALAAGCTVVL 665
E ++P N F + P GV G I PWN+P+ M WK+ PA+A+G VVL
Sbjct: 136 VAETDNPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGNCVVL 195
Query: 666 KPAEQTPLTXXXXXXXXKEAGFPPG 740
KP+E P + KEAG P G
Sbjct: 196 KPSELAPWSCLEFALICKEAGLPDG 220
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +1
Query: 739 GXVNVVPGYGATAGGALTHHPDVDKIAFTGSTEVGRIILXAAS 867
G +NV+ G G +G AL+ HP + +AFTGS G+ I+ AA+
Sbjct: 220 GVLNVIIGSGKESGAALSCHPKIAYLAFTGSLATGKKIMHAAA 262
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 64.1 bits (149), Expect = 3e-11
Identities = 29/63 (46%), Positives = 38/63 (60%)
Frame = +3
Query: 552 TMKEPVGVCGQIIPWNYPIPMMSWKIAPALAAGCTVVLKPAEQTPLTXXXXXXXXKEAGF 731
++K+PVGV I PWN+P M++ K ALAAGCT + PA +TP +EAGF
Sbjct: 150 SIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPYVCLGLVRLAQEAGF 209
Query: 732 PPG 740
P G
Sbjct: 210 PDG 212
Score = 39.5 bits (88), Expect = 6e-04
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +1
Query: 730 FHRGXVNVVPGYGATAGGA-LTHHPDVDKIAFTGSTEVGRIILXAASA 870
F G +NV+ A+A G LT +P V K++FTGST VG+I++ +++
Sbjct: 209 FPDGVLNVITSSDASAHGKELTTNPIVRKVSFTGSTNVGKILMGQSAS 256
Score = 34.3 bits (75), Expect = 0.023
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 147 YTKLFINNXWVXAVSKKTFPXINPQXETVITQVAEGXKADIDLAVAAAKKAF 302
+ + F+ W+ + + KTF NP +I +VA+ + A++AA +AF
Sbjct: 17 HAQSFVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAF 68
Score = 33.9 bits (74), Expect = 0.031
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 425 GKPVKQSEEEVYFSASVLRYYAGKADKILGNTIPSERRS 541
GKP+ Q+E EV + L++YA +A + G+ PS +S
Sbjct: 106 GKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDVAPSSLQS 144
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 37.5 bits (83), Expect = 0.003
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 561 EPVGVCGQIIPWNYPIPMMSWKIAPALAAGCTVVLKPAEQT 683
EP+GV ++ WNYP+ I AL AG +V+K +E T
Sbjct: 126 EPLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELT 166
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 585 IIPWNYPIPMMSWKIAPALAAGCTVVLKPAEQTPLTXXXXXXXXKEAGFPPG 740
I P+N+ + AP L G V++KP++ L+ +EAG P G
Sbjct: 189 ITPFNFTAIAGNLAAAPLLM-GNVVLMKPSDHAVLSSYIVYQIFREAGLPAG 239
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 739 GXVNVVPGYGATAGGALTHHPDVDKIAFTGSTEVGR 846
G + +PG +HP+ + FTGST V R
Sbjct: 239 GALQFIPGDAVEVSKVCFNHPEFAGLHFTGSTAVFR 274
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 572 SVRSDNTVELPHTNDVLENSTSLSCRMYR--CSEAS*TN 682
SVR +NT +L D++E + R++R SEA+ N
Sbjct: 357 SVRDENTKKLKELQDIIEEQSKHMARLHREGFSEAAENN 395
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 6.2
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +2
Query: 497 ADKILGNTIPSERRSPYVHHEGTCRSVRSDNTVELPHTNDVLENSTSLSCRMYRCSEAS* 676
A+++ PS++ S Y+HH T +++ ++ EL + VL T+ S Y +
Sbjct: 316 AEELSTKVHPSKKLSVYIHHGSTKKNL---DSYELSQYDVVL---TTYSMLAYEMKQNDA 369
Query: 677 TNTTNGARCCRPGQRSGFSTG--GLLMSFPDTVRQRAVL 787
N N A P S T +++ T+R R L
Sbjct: 370 FNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRDTL 408
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 461 FSASVLRYYAGKADKILGNTIPSERRSPYVHHEGTCRSVRSDNTVELP 604
FS+ +LR+Y+ K NT+ S R+S +E + ++ + P
Sbjct: 28 FSSCLLRFYSNPPKKTKKNTLISLRKSAETANEKFIEKINKEHQLFKP 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,452
Number of Sequences: 5004
Number of extensions: 57586
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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