Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_P02
(970 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 146 3e-36
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 146 5e-36
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 4.0
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 27 4.0
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 26 9.2
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 26 9.2
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 9.2
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 26 9.2
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 146 bits (355), Expect = 3e-36
Identities = 71/109 (65%), Positives = 85/109 (77%)
Frame = +1
Query: 316 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 495
NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S
Sbjct: 77 NMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISS 136
Query: 496 KQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 642
KDE+IIEGNSLE+VS SAA I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 137 AVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
Score = 50.0 bits (114), Expect = 5e-07
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +3
Query: 129 GLTVHVQSRLVPVKGPRGVLKRXFKHLAVDIRMVNPRLLKVEXWFGSKKELAAVRTVCS 305
G++V +++RLV VKGPRGVLK+ + + ++++ +K W GS+K A +RT S
Sbjct: 16 GVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGSRKHNACIRTAYS 73
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 146 bits (353), Expect = 5e-36
Identities = 70/109 (64%), Positives = 85/109 (77%)
Frame = +1
Query: 316 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 495
NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S
Sbjct: 77 NMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISS 136
Query: 496 KQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 642
KDE+I+EGNSLE+VS SAA I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 137 AVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
Score = 47.6 bits (108), Expect = 3e-06
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +3
Query: 129 GLTVHVQSRLVPVKGPRGVLKRXFKHLAVDIRMVNPRLLKVEXWFGSKKELAAVRTVCS 305
G+TV +++R V V GPRG LK+ +H+ ++++ +K W GS+K A +R+V S
Sbjct: 16 GVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGSRKHNACIRSVYS 73
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 487 NSPKQKDELIIEGNSLEDVSSSAALIQQS 573
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = +1
Query: 532 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 639
+ D+S+SA + T + N+++ K +GL+++ +T+
Sbjct: 78 MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 645 HNSCFLRYIKTIQELSDILILD 580
H S L Y KT++E++ + I+D
Sbjct: 796 HQSSLLPYFKTLKEIAHLFIID 817
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 9.2
Identities = 6/23 (26%), Positives = 16/23 (69%)
Frame = -2
Query: 492 RVNDSHTRCHLYPSDVFLPQEVT 424
++N++++ CH YP + +P ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 16 PHYSGLPXIFFGFFRLLCQTKPKHAANCSKSASQNPSPGLRSMCN 150
PH+SGL + L P H +N + S++PS G S N
Sbjct: 117 PHHSGLKNL------LEKAMHPGHKSNANSPTSESPSKGFGSFIN 155
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 62 SCVKQSPNMQQIVANQQVKIPVRA 133
SC+ Q +Q+IV QQ +IP ++
Sbjct: 105 SCIHQIAKLQEIVKEQQSQIPKKS 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,171
Number of Sequences: 5004
Number of extensions: 53430
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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