Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O14
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.9  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   8.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 575 STCCDPSPRSQTTAASCLAGC 637
           ST   P P S T A   L+GC
Sbjct: 837 STSTSPRPASSTAATLVLSGC 857


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 347 NCKNTYHTISELS 309
           NC NTY  IS+LS
Sbjct: 183 NCDNTYAYISDLS 195


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 308 NLIQISCDKCFYN*KSCH 361
           N+ Q  C  C Y  K CH
Sbjct: 41  NVYQYRCANCTYATKYCH 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,997
Number of Sequences: 438
Number of extensions: 5129
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)