Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O07
         (929 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   9.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   9.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   9.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   9.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 386 FDGKRVLYDVFGKIDLDTPWHLGRFILENQPCEL--VSVIWT 267
           F    VLY +   + L  P +L  + L+ Q C L   S  WT
Sbjct: 143 FPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWT 184


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 386 FDGKRVLYDVFGKIDLDTPWHLGRFILENQPCEL--VSVIWT 267
           F    VLY +   + L  P +L  + L+ Q C L   S  WT
Sbjct: 143 FPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWT 184


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 14  PXPVNHWTD*LFXIYCRGRGLPRPLSYSRSSEEAFFGAPRLLSP 145
           P  ++ W D +F    R  G+P  L+    S++   G P LL P
Sbjct: 66  PSDIDQWHDKIFVTMLRYNGVPSSLNV--ISKKVGDGGP-LLQP 106


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 14  PXPVNHWTD*LFXIYCRGRGLPRPLSYSRSSEEAFFGAPRLLSP 145
           P  ++ W D +F    R  G+P  L+    S++   G P LL P
Sbjct: 66  PSDIDQWHDKIFVTMLRYNGVPSSLNV--ISKKVGDGGP-LLQP 106


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 14  PXPVNHWTD*LFXIYCRGRGLPRPLSYSRSSEEAFFGAPRLLSP 145
           P  ++ W D +F    R  G+P  L+    S++   G P LL P
Sbjct: 66  PSDIDQWHDKIFVTMLRYNGVPSSLNV--ISKKVGDGGP-LLQP 106


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 213 VKCSRMNIAC*LYSGNNQRPNDRD 284
           V CSR ++   +Y+ +  RP D D
Sbjct: 44  VYCSRNSLMTHIYTYHKSRPGDID 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,345
Number of Sequences: 438
Number of extensions: 5029
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)