Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O05
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    50   4e-08
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   2.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   5.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   5.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   5.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   8.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   8.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 49.6 bits (113), Expect = 4e-08
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
 Frame = +3

Query: 261 KSKGIKPFTITADVTDDGDTQRIINETIEHYGKLDVLINNAGVIGMGGIKNSTMETYDDV 440
           KSK  K   +  D+++  D  ++I    ++ G +D+LINNA +     ++N  +  +  +
Sbjct: 52  KSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKI 111

Query: 441 MSTNLRSVYRLTMLAVPHLIQTK----GCIVNLSCIAGTKPSTM---ALAYNISKAALDH 599
              NL  +    +  V  L++ K    G IVN++  +G     M     AY  SK AL  
Sbjct: 112 FDINLLGL-TCMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTT 170

Query: 600 FTKCVALELA--PDGIRVNSVNPGFVKTNL 683
            T C+  ELA     I+V S++P  V+T++
Sbjct: 171 LTDCLRSELAQCESNIKVISISPDLVETDM 200


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 264 IFHSITRFDVNYFLFDRQVLIV 199
           I+ S    DV YF FD+Q  I+
Sbjct: 146 IYQSSCTIDVTYFPFDQQTCIM 167


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 264 IFHSITRFDVNYFLFDRQ 211
           IF S    DV YF FD+Q
Sbjct: 140 IFKSSCEIDVRYFPFDQQ 157


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 264 IFHSITRFDVNYFLFDRQVLIV 199
           I+ S    DV YF FD Q  ++
Sbjct: 148 IYKSSCEIDVEYFPFDEQTCVL 169


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 264 IFHSITRFDVNYFLFDRQVLIV 199
           I+ S    DV YF FD Q  ++
Sbjct: 144 IYKSSCEIDVEYFPFDEQTCVM 165



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 381 AGVIGMGGIKNSTMETYDDVMSTNLRSVYRLTMLAVPHLI 500
           A V+G  GI       YDD +  ++R     +  A PH++
Sbjct: 524 AVVVGTAGIILQAPTLYDDRIPIDVRLSEIASTTAKPHIV 563


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 264 IFHSITRFDVNYFLFDRQ 211
           I+ S    DV YF FD Q
Sbjct: 140 IYKSFCEIDVEYFPFDEQ 157


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 15/81 (18%), Positives = 35/81 (43%)
 Frame = +3

Query: 507 KGCIVNLSCIAGTKPSTMALAYNISKAALDHFTKCVALELAPDGIRVNSVNPGFVKTNLL 686
           +GC+      A T  + +  A ++ K  L  F     +++ P  I+        +  NL+
Sbjct: 287 RGCLQTYLINASTYLNEVHTA-SLRKFILSAFDMARIIQITPKRIQYAQHKENELYANLM 345

Query: 687 KGIGLSEDQLELFVKNVVGNM 749
           K +   + ++   ++N++  M
Sbjct: 346 KIVHEKQQEITGLIQNIIQEM 366


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 15/81 (18%), Positives = 35/81 (43%)
 Frame = +3

Query: 507 KGCIVNLSCIAGTKPSTMALAYNISKAALDHFTKCVALELAPDGIRVNSVNPGFVKTNLL 686
           +GC+      A T  + +  A ++ K  L  F     +++ P  I+        +  NL+
Sbjct: 325 RGCLQTYLINASTYLNEVHTA-SLRKFILSAFDMARIIQITPKRIQYAQHKENELYANLM 383

Query: 687 KGIGLSEDQLELFVKNVVGNM 749
           K +   + ++   ++N++  M
Sbjct: 384 KIVHEKQQEITGLIQNIIQEM 404


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 13  YASLLGHSLXFWQTRRFTQ 69
           Y+++  H+L +  T++FTQ
Sbjct: 264 YSAMSSHNLNYVNTKQFTQ 282


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +2

Query: 110 HGIWRKSCFDNRCK 151
           H IWR  CF    K
Sbjct: 85  HNIWRPDCFFKNAK 98


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = -1

Query: 392 DHSGVVYQNVKFSIMFNGFINYSLGVAVIGD 300
           +   + +Q   +  ++NG+I   +   V+GD
Sbjct: 423 EREAITFQYTDWEEVYNGYIYQKMVADVVGD 453


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = -1

Query: 392 DHSGVVYQNVKFSIMFNGFINYSLGVAVIGD 300
           +   + +Q   +  ++NG+I   +   V+GD
Sbjct: 423 EREAITFQYTDWEEVYNGYIYQKMVADVVGD 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,870
Number of Sequences: 438
Number of extensions: 4313
Number of successful extensions: 24
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)