Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N24
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.8  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   8.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   8.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 90  GEHNENILSDMLPTYYARQFP 152
           G H + +L+D+L TY   + P
Sbjct: 21  GSHEKRLLNDLLDTYNVLERP 41


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 99  NENILSDMLPTYYARQFPQNIFL 167
           NE++    + T Y R++  NIFL
Sbjct: 104 NEDLNWQPIATKYLRRYEDNIFL 126


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 99  NENILSDMLPTYYARQFPQNIFL 167
           NE++    + T Y R++  NIFL
Sbjct: 119 NEDLNWQPIATKYLRRYEDNIFL 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,856
Number of Sequences: 438
Number of extensions: 5373
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)