Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N13
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    29   0.043
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    29   0.043
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    29   0.043
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    29   0.043
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   4.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   4.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   4.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   4.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.6  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 29.5 bits (63), Expect = 0.043
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 483 KGDXKYLQLCTEEHKLIIQERALRTLFADAEKEERELFATMSAAVK---LGHERERAHAE 653
           K D +Y +LC EE KL ++ER  R  ++ + + E+  +       K      ER R   E
Sbjct: 14  KKDRQYEKLCNEEEKL-LEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTE 72

Query: 654 RNK 662
           R +
Sbjct: 73  RER 75


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 29.5 bits (63), Expect = 0.043
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 483 KGDXKYLQLCTEEHKLIIQERALRTLFADAEKEERELFATMSAAVK---LGHERERAHAE 653
           K D +Y +LC EE KL ++ER  R  ++ + + E+  +       K      ER R   E
Sbjct: 14  KKDRQYEKLCNEEEKL-LEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTE 72

Query: 654 RNK 662
           R +
Sbjct: 73  RER 75


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 29.5 bits (63), Expect = 0.043
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 483 KGDXKYLQLCTEEHKLIIQERALRTLFADAEKEERELFATMSAAVK---LGHERERAHAE 653
           K D +Y +LC EE KL ++ER  R  ++ + + E+  +       K      ER R   E
Sbjct: 14  KKDRQYEKLCNEEEKL-LEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTE 72

Query: 654 RNK 662
           R +
Sbjct: 73  RER 75


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 29.5 bits (63), Expect = 0.043
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 483 KGDXKYLQLCTEEHKLIIQERALRTLFADAEKEERELFATMSAAVK---LGHERERAHAE 653
           K D +Y +LC EE KL ++ER  R  ++ + + E+  +       K      ER R   E
Sbjct: 14  KKDRQYEKLCNEEEKL-LEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTE 72

Query: 654 RNK 662
           R +
Sbjct: 73  RER 75


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 310 NXKNSRESKXLWRYKTR*STRRTNSLLPKI 399
           N  + R+ +  W+ ++R  T R  S  PKI
Sbjct: 52  NENSYRKYRETWKERSRDRTERERSREPKI 81


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 310 NXKNSRESKXLWRYKTR*STRRTNSLLPKI 399
           N  + R+ +  W+ ++R  T R  S  PKI
Sbjct: 52  NENSYRKYRETWKERSRDRTERERSREPKI 81


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 310 NXKNSRESKXLWRYKTR*STRRTNSLLPKI 399
           N  + R+ +  W+ ++R  T R  S  PKI
Sbjct: 52  NENSYRKYRETWKERSRDRTERERSREPKI 81


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 310 NXKNSRESKXLWRYKTR*STRRTNSLLPKI 399
           N  + R+ +  W+ ++R  T R  S  PKI
Sbjct: 52  NENSYRKYRETWKERSRDRTERERSREPKI 81


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 793 CTPSRGAGPPAGPTS 837
           CTPS   GP   PTS
Sbjct: 394 CTPSPPRGPGGVPTS 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,829
Number of Sequences: 438
Number of extensions: 4875
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)