Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N04
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.          155   4e-40
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.4  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score =  155 bits (377), Expect = 4e-40
 Identities = 77/81 (95%), Positives = 77/81 (95%)
 Frame = +1

Query: 139 RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHA 318
           RHRKVL DNIQGITKPAIRRLARRGGVKRISGLIYEETR VLKVFLENVIRDAVTYTEH 
Sbjct: 18  RHRKVLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHT 77

Query: 319 KRKTVTAMDVVYALKRQGRTL 381
           KRKTVTAMDVVYALK QGRTL
Sbjct: 78  KRKTVTAMDVVYALKIQGRTL 98


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 249 FLVNQAGYTFDAAASRQSSNGRLRYSLNIISE 154
           F+V   G     A  R++S   L  SLN+I E
Sbjct: 6   FMVACLGIACQGAIVRENSPRNLEKSLNVIHE 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,401
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)