Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_N01
(905 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U31659-1|AAA84390.1| 677|Homo sapiens TAFII80 protein. 93 1e-18
L25444-1|AAA63643.1| 677|Homo sapiens TAFII70 protein. 93 1e-18
BC018115-1|AAH18115.1| 677|Homo sapiens TAF6 RNA polymerase II,... 93 1e-18
AY149894-1|AAN10295.1| 677|Homo sapiens TAF6 RNA polymerase II,... 93 1e-18
AF069735-1|AAC39905.1| 622|Homo sapiens PCAF associated factor ... 31 5.7
>U31659-1|AAA84390.1| 677|Homo sapiens TAFII80 protein.
Length = 677
Score = 93.1 bits (221), Expect = 1e-18
Identities = 54/148 (36%), Positives = 81/148 (54%)
Frame = +2
Query: 380 LADXVTYRLKSDCSXMP*KFMHHSKRQKLSITDIESCPEDKKQ*VSIWIYSA*FAAXXXX 559
L D V+YR+K + + KFMH KRQKL+ +DI+ + K ++ + A
Sbjct: 39 LTDEVSYRIK-EIAQDALKFMHMGKRQKLTTSDIDYALKLKNV-EPLYGFHAQEFIPFRF 96
Query: 560 XXXXXXXXXXXXXXDRSLGRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEA 739
+ L I++ P P+VPLDV ++AHWLS++G QP +PENPPP KE
Sbjct: 97 ASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQ 156
Query: 740 QKLESVDPISKLSKPSNKDSAGKPICGK 823
QK E+ +P+ K +KP ++ P+ GK
Sbjct: 157 QKAEATEPL-KSAKPGQEEDG--PLKGK 181
Score = 64.5 bits (150), Expect = 5e-10
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +3
Query: 483 NHALKIKNNECQYGFIQPDSLPFRFASGGGRELHFIEEKEIDLS 614
++ALK+KN E YGF + +PFRFASGGGREL+F EEKE+DLS
Sbjct: 72 DYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLS 115
>L25444-1|AAA63643.1| 677|Homo sapiens TAFII70 protein.
Length = 677
Score = 93.1 bits (221), Expect = 1e-18
Identities = 54/148 (36%), Positives = 81/148 (54%)
Frame = +2
Query: 380 LADXVTYRLKSDCSXMP*KFMHHSKRQKLSITDIESCPEDKKQ*VSIWIYSA*FAAXXXX 559
L D V+YR+K + + KFMH KRQKL+ +DI+ + K ++ + A
Sbjct: 39 LTDEVSYRIK-EIAQDALKFMHMGKRQKLTTSDIDYALKLKNV-EPLYGFHAQEFIPFRF 96
Query: 560 XXXXXXXXXXXXXXDRSLGRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEA 739
+ L I++ P P+VPLDV ++AHWLS++G QP +PENPPP KE
Sbjct: 97 ASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQ 156
Query: 740 QKLESVDPISKLSKPSNKDSAGKPICGK 823
QK E+ +P+ K +KP ++ P+ GK
Sbjct: 157 QKAEATEPL-KSAKPGQEEDG--PLKGK 181
Score = 64.5 bits (150), Expect = 5e-10
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +3
Query: 483 NHALKIKNNECQYGFIQPDSLPFRFASGGGRELHFIEEKEIDLS 614
++ALK+KN E YGF + +PFRFASGGGREL+F EEKE+DLS
Sbjct: 72 DYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLS 115
>BC018115-1|AAH18115.1| 677|Homo sapiens TAF6 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 80kDa
protein.
Length = 677
Score = 93.1 bits (221), Expect = 1e-18
Identities = 54/148 (36%), Positives = 81/148 (54%)
Frame = +2
Query: 380 LADXVTYRLKSDCSXMP*KFMHHSKRQKLSITDIESCPEDKKQ*VSIWIYSA*FAAXXXX 559
L D V+YR+K + + KFMH KRQKL+ +DI+ + K ++ + A
Sbjct: 39 LTDEVSYRIK-EIAQDALKFMHMGKRQKLTTSDIDYALKLKNV-EPLYGFHAQEFIPFRF 96
Query: 560 XXXXXXXXXXXXXXDRSLGRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEA 739
+ L I++ P P+VPLDV ++AHWLS++G QP +PENPPP KE
Sbjct: 97 ASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQ 156
Query: 740 QKLESVDPISKLSKPSNKDSAGKPICGK 823
QK E+ +P+ K +KP ++ P+ GK
Sbjct: 157 QKAEATEPL-KSAKPGQEEDG--PLKGK 181
Score = 64.5 bits (150), Expect = 5e-10
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +3
Query: 483 NHALKIKNNECQYGFIQPDSLPFRFASGGGRELHFIEEKEIDLS 614
++ALK+KN E YGF + +PFRFASGGGREL+F EEKE+DLS
Sbjct: 72 DYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLS 115
>AY149894-1|AAN10295.1| 677|Homo sapiens TAF6 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 80kDa
protein.
Length = 677
Score = 93.1 bits (221), Expect = 1e-18
Identities = 54/148 (36%), Positives = 81/148 (54%)
Frame = +2
Query: 380 LADXVTYRLKSDCSXMP*KFMHHSKRQKLSITDIESCPEDKKQ*VSIWIYSA*FAAXXXX 559
L D V+YR+K + + KFMH KRQKL+ +DI+ + K ++ + A
Sbjct: 39 LTDEVSYRIK-EIAQDALKFMHMGKRQKLTTSDIDYALKLKNV-EPLYGFHAQEFIPFRF 96
Query: 560 XXXXXXXXXXXXXXDRSLGRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEA 739
+ L I++ P P+VPLDV ++AHWLS++G QP +PENPPP KE
Sbjct: 97 ASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQ 156
Query: 740 QKLESVDPISKLSKPSNKDSAGKPICGK 823
QK E+ +P+ K +KP ++ P+ GK
Sbjct: 157 QKAEATEPL-KSAKPGQEEDG--PLKGK 181
Score = 64.5 bits (150), Expect = 5e-10
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +3
Query: 483 NHALKIKNNECQYGFIQPDSLPFRFASGGGRELHFIEEKEIDLS 614
++ALK+KN E YGF + +PFRFASGGGREL+F EEKE+DLS
Sbjct: 72 DYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLS 115
>AF069735-1|AAC39905.1| 622|Homo sapiens PCAF associated factor 65
alpha protein.
Length = 622
Score = 31.1 bits (67), Expect = 5.7
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 356 LGXXAAKXLADXVTYRLKSDCSXMP*KFMHHSKRQKLSITD 478
L A LA+ V YRL+ + + +FM H+KR+KL++ D
Sbjct: 28 LSDEVAALLAEDVCYRLR-EATQNSSQFMKHTKRRKLTVED 67
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,552,150
Number of Sequences: 237096
Number of extensions: 2146875
Number of successful extensions: 10318
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10303
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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