Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N01
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.95 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.8  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    23   5.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 611 LGRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEAQKL-ESVDPISKL 775
           + R +S P    P  +   ++  S++  QPT+ + PP      ++L E+V   S++
Sbjct: 703 MNRAVSVPQSHQPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLAEAVRTASQI 758


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 569 SSRCEPKWQRIRLNKSILTLIVFYL-QGMILYL*WKVFVSLSDA*TFMAXLN-NHFS 405
           ++RC  KW  I     I T++ F L   +I+ L   + + L  +    A +N NH S
Sbjct: 208 TARCSMKWTLIEHAFEISTMLFFVLPMTIIIVLYILIAIKLRRSRMLTATVNRNHLS 264


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 649 IGCICSCTLAKCGWGSTNST*KSTTAFKRSSE 744
           +GC+C C LA    G+  S+  S+ +  ++ E
Sbjct: 1   MGCLCECDLATPRTGTNCSSGSSSDSDGQTDE 32


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 856 MHKF*CFQSCCFATYRF 806
           M KF CF++C F    F
Sbjct: 49  MKKFGCFEACVFQKLHF 65


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 814 YRFTCRIFIAWF 779
           ++ TC+I IAWF
Sbjct: 107 FKSTCKIDIAWF 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,478
Number of Sequences: 438
Number of extensions: 4093
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)