Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M22
(862 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30 pro... 171 3e-42
L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30 pro... 171 3e-42
BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30 p... 171 3e-42
BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30 p... 171 3e-42
AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30 p... 171 3e-42
X81625-1|CAA57281.1| 437|Homo sapiens C11 protein protein. 34 0.58
U90176-1|AAB49726.1| 437|Homo sapiens eukaryotic release factor... 34 0.58
BT007374-1|AAP36038.1| 404|Homo sapiens eukaryotic translation ... 34 0.58
BC088358-1|AAH88358.1| 437|Homo sapiens eukaryotic translation ... 34 0.58
BC014269-1|AAH14269.1| 404|Homo sapiens ETF1 protein protein. 34 0.58
AF095901-1|AAD43966.1| 437|Homo sapiens eRF1 protein. 34 0.58
>X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 171 bits (416), Expect = 3e-42
Identities = 79/106 (74%), Positives = 87/106 (82%)
Frame = +1
Query: 178 RNRKRPSSQLTPALPWXMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYA 357
+ K+ + L MKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEIEYYA
Sbjct: 5 KKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYA 64
Query: 358 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 495
+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE
Sbjct: 65 MLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE 110
Score = 38.7 bits (86), Expect = 0.027
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +3
Query: 165 MVAAKKQKKTIESINSRLALXDEIGKILLRIQANFENSSTRQSKA 299
MVAAKK KK++ESINSRL L + GK +L + + RQ KA
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLK--MIRQGKA 43
>L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 171 bits (416), Expect = 3e-42
Identities = 79/106 (74%), Positives = 87/106 (82%)
Frame = +1
Query: 178 RNRKRPSSQLTPALPWXMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYA 357
+ K+ + L MKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEIEYYA
Sbjct: 5 KKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYA 64
Query: 358 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 495
+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE
Sbjct: 65 MLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE 110
Score = 38.7 bits (86), Expect = 0.027
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +3
Query: 165 MVAAKKQKKTIESINSRLALXDEIGKILLRIQANFENSSTRQSKA 299
MVAAKK KK++ESINSRL L + GK +L + + RQ KA
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLK--MIRQGKA 43
>BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 171 bits (416), Expect = 3e-42
Identities = 79/106 (74%), Positives = 87/106 (82%)
Frame = +1
Query: 178 RNRKRPSSQLTPALPWXMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYA 357
+ K+ + L MKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEIEYYA
Sbjct: 5 KKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYA 64
Query: 358 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 495
+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE
Sbjct: 65 MLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE 110
Score = 38.7 bits (86), Expect = 0.027
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +3
Query: 165 MVAAKKQKKTIESINSRLALXDEIGKILLRIQANFENSSTRQSKA 299
MVAAKK KK++ESINSRL L + GK +L + + RQ KA
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLK--MIRQGKA 43
>BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 171 bits (416), Expect = 3e-42
Identities = 79/106 (74%), Positives = 87/106 (82%)
Frame = +1
Query: 178 RNRKRPSSQLTPALPWXMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYA 357
+ K+ + L MKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEIEYYA
Sbjct: 5 KKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYA 64
Query: 358 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 495
+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE
Sbjct: 65 MLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE 110
Score = 38.7 bits (86), Expect = 0.027
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +3
Query: 165 MVAAKKQKKTIESINSRLALXDEIGKILLRIQANFENSSTRQSKA 299
MVAAKK KK++ESINSRL L + GK +L + + RQ KA
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLK--MIRQGKA 43
>AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 171 bits (416), Expect = 3e-42
Identities = 79/106 (74%), Positives = 87/106 (82%)
Frame = +1
Query: 178 RNRKRPSSQLTPALPWXMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYA 357
+ K+ + L MKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEIEYYA
Sbjct: 5 KKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYA 64
Query: 358 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 495
+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE
Sbjct: 65 MLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE 110
Score = 38.7 bits (86), Expect = 0.027
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +3
Query: 165 MVAAKKQKKTIESINSRLALXDEIGKILLRIQANFENSSTRQSKA 299
MVAAKK KK++ESINSRL L + GK +L + + RQ KA
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLK--MIRQGKA 43
>X81625-1|CAA57281.1| 437|Homo sapiens C11 protein protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.58
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 235 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 333
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>U90176-1|AAB49726.1| 437|Homo sapiens eukaryotic release factor 1
protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.58
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 235 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 333
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>BT007374-1|AAP36038.1| 404|Homo sapiens eukaryotic translation
termination factor 1 protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.58
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 235 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 333
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 297
>BC088358-1|AAH88358.1| 437|Homo sapiens eukaryotic translation
termination factor 1 protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.58
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 235 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 333
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>BC014269-1|AAH14269.1| 404|Homo sapiens ETF1 protein protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.58
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 235 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 333
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 297
>AF095901-1|AAD43966.1| 437|Homo sapiens eRF1 protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.58
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 235 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 333
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,745,533
Number of Sequences: 237096
Number of extensions: 1569182
Number of successful extensions: 6272
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6272
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -