Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M13
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   8.6  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 781 PAELVYFACRLVYGDHISGLNLLFKQRINHFGSHVVV 671
           PA+LV +AC +V G  +S  N ++   +   GS+  V
Sbjct: 528 PADLVVYACNVV-GSGLSHGNWIYPASMTIPGSNSAV 563


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 848 PRDTGRTWPAD 816
           PR  GR WP D
Sbjct: 913 PRSPGRAWPGD 923


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 377 CYWPVSLVQGKTAIAMGLAQALG 445
           CYWP     G T +  G+A   G
Sbjct: 142 CYWPRGKNLGGTTLHHGMAYHRG 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,031
Number of Sequences: 438
Number of extensions: 3530
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)