Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M07
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   4.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   4.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   4.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   4.8  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   4.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 280 CLCHFCGSRRFCCF 239
           C C  C S+  CCF
Sbjct: 435 CECKTCNSKTKCCF 448


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 743 NNNYTFIKLENNNEKQ 696
           +NNY +    NNN KQ
Sbjct: 86  SNNYNYSNYNNNNYKQ 101


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 743 NNNYTFIKLENNNEKQ 696
           +NNY +    NNN KQ
Sbjct: 86  SNNYNYSNYNNNNYKQ 101


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 743 NNNYTFIKLENNNEKQ 696
           +NNY +    NNN KQ
Sbjct: 86  SNNYNYSNYNNNNYKQ 101


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 743 NNNYTFIKLENNNEKQ 696
           +NNY +    NNN KQ
Sbjct: 86  SNNYNYSNYNNNNYKQ 101


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 743 NNNYTFIKLENNNEKQ 696
           +NNY +    NNN KQ
Sbjct: 86  SNNYNYSNYNNNNYKQ 101


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 743 NNNYTFIKLENNNEKQ 696
           +NNY +    NNN KQ
Sbjct: 86  SNNYNYSNYNNNNYKQ 101


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 868  NGCXILYLNIQ 836
            NGC ILY  IQ
Sbjct: 1525 NGCPILYFTIQ 1535


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 868  NGCXILYLNIQ 836
            NGC ILY  IQ
Sbjct: 1521 NGCPILYFTIQ 1531


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,284
Number of Sequences: 438
Number of extensions: 3873
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)