Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M06
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    28   0.13 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   4.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.5  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +2

Query: 344 ISQVVIVQWKKRHYRSYAFFTMIAMWSIPVMISFKNGWWRFVSIWSVFTLLTALVIRKSS 523
           I Q + + +K +    Y  F       + VM+S+ + W    +  +   L    V+  ++
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTT 286

Query: 524 IKP-MSATTPRLVYKWFYLIYKVCCFVGVFGYIL 622
           I   + ++ PR+ Y     IY V CFV VF  +L
Sbjct: 287 ISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALL 320


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 801 YRLGSWRATCAPC 839
           +RL  WR TC  C
Sbjct: 366 FRLAFWRLTCRKC 378


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 506 VIRKSSIKPMSATTPRLVYKWFYLIY 583
           V+R++S       T  +++KW YL Y
Sbjct: 22  VVRENSSGKNLTNTLNVIHKWKYLDY 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,818
Number of Sequences: 438
Number of extensions: 5266
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)