Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M02
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    29   0.66 
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    29   0.66 
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   2.7  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    27   2.7  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   4.6  

>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 541 AINLSRNVGLMLVFFLYLYHPTISLAVLESNSDNTSSFIL 422
           AIN S+N G++    L  + P++ LA +ES  DN    +L
Sbjct: 498 AINNSQNAGILACRILATFQPSL-LAAMESFMDNMKEIVL 536


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 175 KFNYYFYDCYITQQLSLYM 119
           KFNYY  D Y+TQ   LY+
Sbjct: 305 KFNYYGQDAYLTQSSQLYL 323


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 517 LHFEIS*LQKVYKNTLKNIMGRKHL 591
           LH EIS +QK Y+N ++N+    H+
Sbjct: 427 LHLEISKIQKKYQNQIENMKKGSHV 451


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 160 FYDCYITQQLSLYMVNCLMS*TKXLAATIDXTRCNCAKKLKD 35
           F+DC     L+ ++V+CL S    LA      +C  A++L+D
Sbjct: 170 FFDCIYNPHLNAHLVSCLAS----LAERYPGMQCLFAQELRD 207


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 360 EYQALHYHFESLICDWLFEMLYLQLEN--LPDCIL 262
           +Y+ L Y+     C+W+FE +   +E+  L DC+L
Sbjct: 668 QYEKLFYN-----CEWIFEKIQFHMESITLEDCLL 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,807
Number of Sequences: 5004
Number of extensions: 65056
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)