Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M02
         (877 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531340-1|ABP87396.1|  409|Homo sapiens abraxas protein protein.      98   4e-20
AY358576-1|AAQ88939.1|  409|Homo sapiens EGES496 protein.              98   4e-20
D63877-1|BAA09927.1|  419|Homo sapiens KIAA0157 protein.               79   2e-14
CR457153-1|CAG33434.1|  475|Homo sapiens SPG3A protein.                30   9.6  
BC010708-1|AAH10708.2|  558|Homo sapiens spastic paraplegia 3A (...    30   9.6  
AY032844-1|AAK51160.1|  475|Homo sapiens GTPase protein.               30   9.6  
AK223436-1|BAD97156.1|  558|Homo sapiens atlastin variant protein.     30   9.6  
AF444143-1|AAL37898.1|  558|Homo sapiens brain-specific GTP-bind...    30   9.6  
AF131801-1|AAD20047.1|  475|Homo sapiens Unknown protein.              30   9.6  

>EF531340-1|ABP87396.1|  409|Homo sapiens abraxas protein protein.
          Length = 409

 Score = 97.9 bits (233), Expect = 4e-20
 Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 1/175 (0%)
 Frame = +3

Query: 216 LSGTALSFLLYECVNSGCSQEGFLVGDITSQITNHISDSQSDNARLDTQIVIRTVLPLPS 395
           LSG  L  L ++ +N+    EGFL+G++  +  N I+DSQ D+  +   I I+  +P   
Sbjct: 10  LSGFVLGALAFQHLNTDSDTEGFLLGEVKGEAKNSITDSQMDDVEVVYTIDIQKYIPCYQ 69

Query: 396 VSLFYFPTGRIKEEVLSELLSNTAKEIVGWYKYRKNTNIKPTFRDKLIAKGLQKYFEKYH 575
           +  FY  +G + E+ L ++LSN  K +VGWYK+R++++   TFR++L+ K LQ++F    
Sbjct: 70  LFSFYNSSGEVNEQALKKILSNVKKNVVGWYKFRRHSDQIMTFRERLLHKNLQEHFSNQD 129

Query: 576 GKKTFVTCNLTNRTSSAASTHTFTYRFGKINCFDMYEYIEDVTGNLG-EKVTGYK 737
                +T ++    + + STH   +   K     ++  +  V  NLG  +  GYK
Sbjct: 130 LVFLLLTPSI---ITESCSTHRLEHSLYKPQ-KGLFHRVPLVVANLGMSEQLGYK 180


>AY358576-1|AAQ88939.1|  409|Homo sapiens EGES496 protein.
          Length = 409

 Score = 97.9 bits (233), Expect = 4e-20
 Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 1/175 (0%)
 Frame = +3

Query: 216 LSGTALSFLLYECVNSGCSQEGFLVGDITSQITNHISDSQSDNARLDTQIVIRTVLPLPS 395
           LSG  L  L ++ +N+    EGFL+G++  +  N I+DSQ D+  +   I I+  +P   
Sbjct: 10  LSGFVLGALAFQHLNTDSDTEGFLLGEVKGEAKNSITDSQMDDVEVVYTIDIQKYIPCYQ 69

Query: 396 VSLFYFPTGRIKEEVLSELLSNTAKEIVGWYKYRKNTNIKPTFRDKLIAKGLQKYFEKYH 575
           +  FY  +G + E+ L ++LSN  K +VGWYK+R++++   TFR++L+ K LQ++F    
Sbjct: 70  LFSFYNSSGEVNEQALKKILSNVKKNVVGWYKFRRHSDQIMTFRERLLHKNLQEHFSNQD 129

Query: 576 GKKTFVTCNLTNRTSSAASTHTFTYRFGKINCFDMYEYIEDVTGNLG-EKVTGYK 737
                +T ++    + + STH   +   K     ++  +  V  NLG  +  GYK
Sbjct: 130 LVFLLLTPSI---ITESCSTHRLEHSLYKPQ-KGLFHRVPLVVANLGMSEQLGYK 180


>D63877-1|BAA09927.1|  419|Homo sapiens KIAA0157 protein.
          Length = 419

 Score = 79.0 bits (186), Expect = 2e-14
 Identities = 37/115 (32%), Positives = 63/115 (54%)
 Frame = +3

Query: 213 SLSGTALSFLLYECVNSGCSQEGFLVGDITSQITNHISDSQSDNARLDTQIVIRTVLPLP 392
           S+SG   S + +   NS    EGFL+G++  + T  ISDSQ  N      I I    P  
Sbjct: 8   SISGYTFSAVCFHSANSNADHEGFLLGEVRQEETFSISDSQISNTEFLQVIQIYNHQPCS 67

Query: 393 SVSLFYFPTGRIKEEVLSELLSNTAKEIVGWYKYRKNTNIKPTFRDKLIAKGLQK 557
            +  FY    ++ EE L  +L +  K+++GWY++R+NT  + ++R++++ K L +
Sbjct: 68  KLFSFYDYASKVNEESLDRILKDRRKKVIGWYRFRRNTQQQMSYREQVLHKQLTR 122


>CR457153-1|CAG33434.1|  475|Homo sapiens SPG3A protein.
          Length = 475

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +3

Query: 378 VLPLPSVSLFYFPT--GRIKEEVLSELLSNTAKEIVGWYKYRKNTNIKPTFRDKLIAKGL 551
           +LP P + +   P   G++KE +  E + N  K ++ W    ++ +IK    +K+  +GL
Sbjct: 185 LLPHPGLKVATNPNFDGKLKE-IDDEFIKNL-KILIPWLLSPESLDIKEINGNKITCRGL 242

Query: 552 QKYFEKY 572
            +YF+ Y
Sbjct: 243 VEYFKAY 249


>BC010708-1|AAH10708.2|  558|Homo sapiens spastic paraplegia 3A
           (autosomal dominant) protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +3

Query: 378 VLPLPSVSLFYFPT--GRIKEEVLSELLSNTAKEIVGWYKYRKNTNIKPTFRDKLIAKGL 551
           +LP P + +   P   G++KE +  E + N  K ++ W    ++ +IK    +K+  +GL
Sbjct: 268 LLPHPGLKVATNPNFDGKLKE-IDDEFIKNL-KILIPWLLSPESLDIKEINGNKITCRGL 325

Query: 552 QKYFEKY 572
            +YF+ Y
Sbjct: 326 VEYFKAY 332


>AY032844-1|AAK51160.1|  475|Homo sapiens GTPase protein.
          Length = 475

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +3

Query: 378 VLPLPSVSLFYFPT--GRIKEEVLSELLSNTAKEIVGWYKYRKNTNIKPTFRDKLIAKGL 551
           +LP P + +   P   G++KE +  E + N  K ++ W    ++ +IK    +K+  +GL
Sbjct: 185 LLPHPGLKVATNPNFDGKLKE-IDDEFIKNL-KILIPWLLSPESLDIKEINGNKITCRGL 242

Query: 552 QKYFEKY 572
            +YF+ Y
Sbjct: 243 VEYFKAY 249


>AK223436-1|BAD97156.1|  558|Homo sapiens atlastin variant protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +3

Query: 378 VLPLPSVSLFYFPT--GRIKEEVLSELLSNTAKEIVGWYKYRKNTNIKPTFRDKLIAKGL 551
           +LP P + +   P   G++KE +  E + N  K ++ W    ++ +IK    +K+  +GL
Sbjct: 268 LLPHPGLKVATNPNFDGKLKE-IDDEFIKNL-KILIPWLLSPESLDIKEINGNKITCRGL 325

Query: 552 QKYFEKY 572
            +YF+ Y
Sbjct: 326 VEYFKAY 332


>AF444143-1|AAL37898.1|  558|Homo sapiens brain-specific GTP-binding
           protein protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +3

Query: 378 VLPLPSVSLFYFPT--GRIKEEVLSELLSNTAKEIVGWYKYRKNTNIKPTFRDKLIAKGL 551
           +LP P + +   P   G++KE +  E + N  K ++ W    ++ +IK    +K+  +GL
Sbjct: 268 LLPHPGLKVATNPNFDGKLKE-IDDEFIKNL-KILIPWLLSPESLDIKEINGNKITCRGL 325

Query: 552 QKYFEKY 572
            +YF+ Y
Sbjct: 326 VEYFKAY 332


>AF131801-1|AAD20047.1|  475|Homo sapiens Unknown protein.
          Length = 475

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +3

Query: 378 VLPLPSVSLFYFPT--GRIKEEVLSELLSNTAKEIVGWYKYRKNTNIKPTFRDKLIAKGL 551
           +LP P + +   P   G++KE +  E + N  K ++ W    ++ +IK    +K+  +GL
Sbjct: 185 LLPHPGLKVATNPNFDGKLKE-IDDEFIKNL-KILIPWLLSPESLDIKEINGNKITCRGL 242

Query: 552 QKYFEKY 572
            +YF+ Y
Sbjct: 243 VEYFKAY 249


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,763,025
Number of Sequences: 237096
Number of extensions: 2093982
Number of successful extensions: 3157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3157
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)