Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M02
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 630 MQQKMFCLLDCKLQMFSSHDIFQSIFVDLL 541
           +++ +FC  D  ++  SSH I  ++ + LL
Sbjct: 47  LKRYLFCEYDPNVRPISSHQIANNVTMQLL 76


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 612 RTSSAASTHTFTYRFGKINCFDMYEYIEDVTG 707
           + SS   T     R  +  C D + YI DVTG
Sbjct: 174 KESSLFVTIAVDVRDTEDKCKDTFAYIADVTG 205


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 400 HFSIFQLEE*KKKCCLNYSLILPKKL 477
           HF++   E  K  CC  Y + L K+L
Sbjct: 445 HFNVTDGETTKTFCCKGYCMDLLKEL 470


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 202 QKRCRLAAPHCHFCY 246
           Q+R R AAPH  F Y
Sbjct: 601 QERMRYAAPHKAFTY 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,097
Number of Sequences: 438
Number of extensions: 4599
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)