Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L19
         (882 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D25218-1|BAA04948.1|  399|Homo sapiens KIAA0112 protein.              152   1e-36
BC013043-1|AAH13043.1|  365|Homo sapiens RRS1 ribosome biogenesi...   152   1e-36
BC001811-1|AAH01811.1|  365|Homo sapiens RRS1 ribosome biogenesi...   152   1e-36

>D25218-1|BAA04948.1|  399|Homo sapiens KIAA0112 protein.
          Length = 399

 Score =  152 bits (369), Expect = 1e-36
 Identities = 70/131 (53%), Positives = 91/131 (69%)
 Frame = +2

Query: 404 NNAQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAXXXXXXXX 583
           +N QLL+N++W+LPTER+EEAIV RLP+PTT LPR KP+P P+PLT+WQ+FA        
Sbjct: 101 DNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPK 160

Query: 584 XXXXLQWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKN 763
               L WDE   +W   +G+++ A +  K WLIEVP N DP+ D + K+   K E+VAKN
Sbjct: 161 KKTNLVWDEVSGQWRRRWGYQR-ARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKN 219

Query: 764 ELQRLXNLARA 796
           EL RL NLARA
Sbjct: 220 ELNRLRNLARA 230



 Score = 41.9 bits (94), Expect = 0.003
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +1

Query: 250 QKXADKYKPITVEKHLELAFDLGSLLASDTN-DLDIKTLKTNKDSYLLALTRE 405
           Q  A+K + ITV K LEL FDLG+LLASD N    ++      ++ L AL R+
Sbjct: 49  QDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARD 101


>BC013043-1|AAH13043.1|  365|Homo sapiens RRS1 ribosome biogenesis
           regulator homolog (S. cerevisiae) protein.
          Length = 365

 Score =  152 bits (369), Expect = 1e-36
 Identities = 70/131 (53%), Positives = 91/131 (69%)
 Frame = +2

Query: 404 NNAQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAXXXXXXXX 583
           +N QLL+N++W+LPTER+EEAIV RLP+PTT LPR KP+P P+PLT+WQ+FA        
Sbjct: 67  DNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPK 126

Query: 584 XXXXLQWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKN 763
               L WDE   +W   +G+++ A +  K WLIEVP N DP+ D + K+   K E+VAKN
Sbjct: 127 KKTNLVWDEVSGQWRRRWGYQR-ARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKN 185

Query: 764 ELQRLXNLARA 796
           EL RL NLARA
Sbjct: 186 ELNRLRNLARA 196



 Score = 41.9 bits (94), Expect = 0.003
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +1

Query: 250 QKXADKYKPITVEKHLELAFDLGSLLASDTN-DLDIKTLKTNKDSYLLALTRE 405
           Q  A+K + ITV K LEL FDLG+LLASD N    ++      ++ L AL R+
Sbjct: 15  QDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARD 67


>BC001811-1|AAH01811.1|  365|Homo sapiens RRS1 ribosome biogenesis
           regulator homolog (S. cerevisiae) protein.
          Length = 365

 Score =  152 bits (369), Expect = 1e-36
 Identities = 70/131 (53%), Positives = 91/131 (69%)
 Frame = +2

Query: 404 NNAQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAXXXXXXXX 583
           +N QLL+N++W+LPTER+EEAIV RLP+PTT LPR KP+P P+PLT+WQ+FA        
Sbjct: 67  DNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPK 126

Query: 584 XXXXLQWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKN 763
               L WDE   +W   +G+++ A +  K WLIEVP N DP+ D + K+   K E+VAKN
Sbjct: 127 KKTNLVWDEVSGQWRRRWGYQR-ARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKN 185

Query: 764 ELQRLXNLARA 796
           EL RL NLARA
Sbjct: 186 ELNRLRNLARA 196



 Score = 41.9 bits (94), Expect = 0.003
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +1

Query: 250 QKXADKYKPITVEKHLELAFDLGSLLASDTN-DLDIKTLKTNKDSYLLALTRE 405
           Q  A+K + ITV K LEL FDLG+LLASD N    ++      ++ L AL R+
Sbjct: 15  QDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARD 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,209,764
Number of Sequences: 237096
Number of extensions: 2081478
Number of successful extensions: 4616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4611
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)