Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_L16
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 287 1e-78
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 274 1e-74
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 31 0.22
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 31 0.22
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 30 0.51
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 28 1.5
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 2.0
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 3.6
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 3.6
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 27 3.6
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 4.7
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 6.2
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 8.2
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 287 bits (704), Expect = 1e-78
Identities = 139/216 (64%), Positives = 170/216 (78%), Gaps = 2/216 (0%)
Frame = +1
Query: 169 SVDKEXLVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 348
+ +E V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 349 RVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVF 522
R++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ ESKVF
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 523 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVF 702
Y KMKGDYYRYLAE A GE R + S + Y+ A EI+ A++ PTHPIRLGLALNFSVF
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVF 182
Query: 703 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 810
YYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKD
Sbjct: 183 YYEILNSPDRACYLAKQAFDEAISELDSLSEESYKD 218
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 274 bits (672), Expect = 1e-74
Identities = 134/216 (62%), Positives = 168/216 (77%), Gaps = 2/216 (0%)
Frame = +1
Query: 169 SVDKEXLVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 348
S +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+SW
Sbjct: 2 SNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRASW 61
Query: 349 RVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVF 522
R+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ ESKVF
Sbjct: 62 RIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVF 121
Query: 523 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVF 702
Y KMKGDYYRYLAE GE + S +AY+ A +I+ A++ PT P+RLGLALNFSVF
Sbjct: 122 YYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVF 181
Query: 703 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 810
YYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKD
Sbjct: 182 YYEILDSPESACHLAKQVFDEAISELDSLSEESYKD 217
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 31.1 bits (67), Expect = 0.22
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +1
Query: 169 SVDKEXLVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 339
SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 340 SSWRVIS 360
S+W S
Sbjct: 62 STWATFS 68
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 31.1 bits (67), Expect = 0.22
Identities = 24/104 (23%), Positives = 43/104 (41%)
Frame = +1
Query: 142 IXSLPSSTXSVDKEXLVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 321
I S+ S S E L+ R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
Query: 322 VVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 453
+R+ + +E+ + EY +E+ L++ C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 29.9 bits (64), Expect = 0.51
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Frame = +1
Query: 298 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYR-VKVEKELR-EICYDVLGL 471
L+S +N A RS + + I + S + ++ + YR VK K L +IC+ +
Sbjct: 968 LVSYVRRNAETAERS--QALPFITRNL-ASIKSHELHEAYRLVKANKILEAQICFRSIIY 1024
Query: 472 LDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAK 648
L L A++ E + + RY+ ++ E R ED+++A + ++ + A
Sbjct: 1025 LA--LTTVANSEEEADEISALIDECCRYIVALSCELERRRLGEEDTKRALELSYYFASAD 1082
Query: 649 MQPTHP-IRLGLALNFS 696
+QP H I L LA+N S
Sbjct: 1083 LQPMHSIIALRLAINAS 1099
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 1.5
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Frame = +1
Query: 367 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 543
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 544 YYR-YLAEVATGETRHSVV--EDSQKAYQDAFEISKAKMQ 654
+R Y+ E+ + ++ E KA +D E SK ++Q
Sbjct: 100 SFRDYVGELNLLKELCKMINEEPELKAIEDT-EESKKQLQ 138
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = -2
Query: 796 LRSMCPVRRWHRRKPVWRVDTPCLANLISHNKRLRNLTPDP 674
LR + P+ +W R++ +W + P + + ++ + P P
Sbjct: 119 LRDVTPINQWKRKRSLWDIKPPGYELVTADQAKMSGVFPLP 159
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 3.6
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +1
Query: 175 DKEXLVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 354
+K+ QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374
Query: 355 ISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 444
S E + E SE R+Q++ +E R + EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 469 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 606
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +1
Query: 598 EDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAE 777
E +K + + + K + T+P +GL+ F Y + D A + D+
Sbjct: 46 EKKKKKKKKSSKKKKTPQEQTNPPTVGLSKIFVNKKYPVGEVCDYAEDNLWRTTDEEKRA 105
Query: 778 LDTLNEDSYKDLR 816
LD N D Y DLR
Sbjct: 106 LDRQNFDQYNDLR 118
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 316 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 432
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 370 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 495
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 304 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 438
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,888
Number of Sequences: 5004
Number of extensions: 63368
Number of successful extensions: 209
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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