Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L15
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 89  YSIPYWTSRRKASLNKILRNSL 24
           Y I  W     + LNKI RNSL
Sbjct: 541 YEIDNWMLDLNSGLNKITRNSL 562


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 89  YSIPYWTSRRKASLNKILRNSL 24
           Y I  W     + LNKI RNSL
Sbjct: 541 YEIDNWMLDLNSGLNKITRNSL 562


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 113 IRK*MLMSYSIPYWTS 66
           +RK   MS  +PYW S
Sbjct: 336 LRKMQEMSIEVPYWIS 351


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 776 YSNFD*TNIYNFTLLHYNAV 835
           Y+N++  N  N+  L+YN +
Sbjct: 338 YNNYNNNNYNNYKKLYYNII 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,510
Number of Sequences: 438
Number of extensions: 3383
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)