Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L13
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.93 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   5.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 637  VPITIDDDEGYEQHYDAFVLYADEDREFV 723
            +P   D D   E+ YD +V Y+  D +FV
Sbjct: 1054 MPACFDSDR--ERLYDCYVCYSPNDEDFV 1080


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 543 YMFSQIIYHIIMYIKSVQTLQKFLEV 466
           Y +SQI+ H++ + K+++   K + V
Sbjct: 229 YYYSQIVSHVVNHEKALREQAKKMNV 254


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 613 IISNEDVYVPITIDDDEGYEQHYDAFVLYADEDREFV 723
           I  N DV+ P     ++   +HY AFV ++   R  V
Sbjct: 453 IYPNPDVFDPDNFLPEKTANRHYYAFVPFSAGPRSCV 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,234
Number of Sequences: 438
Number of extensions: 3174
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)