Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L10
         (930 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.086
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect(2) = 0.086
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -2

Query: 794 PXGGAPPPXXGGXFXXXXPGGGGPPXXXXPPPP 696
           P  GAP P          P  G PP     PPP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 21.0 bits (42), Expect(2) = 0.086
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 608 PPPGGGXXXPP 576
           PPPGG    PP
Sbjct: 46  PPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 725 PPXXXXPPPPP 693
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,617
Number of Sequences: 438
Number of extensions: 3716
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)