Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L05
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 342  RAGTYSGSTRTQLPTRCTASRMHSAQ*LRDEESSDKTQETMSQSA 476
            RAG+Y G   + L  +     +   +    ++S DKT+ET + +A
Sbjct: 1064 RAGSYYGVPHSTLEYKVKERHLMRPRKRDQKQSDDKTKETSTVTA 1108


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -3

Query: 748 PNYRHRSLRDTDRYGECSYRRTVRATSCPSDPLSVSL--HCTYDVTPLVRYRLV 593
           P     S   +D  G  S +  V  T   +    ++L   C Y++  L+RY+L+
Sbjct: 432 PKKSDMSNMQSDDGGPLSLKNKVETTHSGTSLFRINLGIECGYEIKKLLRYKLL 485


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -3

Query: 745 NYRHRSLRDTDRYGECSYRRTVRATSCPSDPLSVSLHCTYDVTPLVRYRLVSD*NYERND 566
           NY    L DTD++G+ ++   ++    PS  L+V  + T +  PL+      D  + +N+
Sbjct: 58  NYTMNYLLDTDQWGDKTFVIIMKFNGVPSS-LNVITNKTGNGGPLL--APYPDWTWAKNE 114

Query: 565 SC 560
           +C
Sbjct: 115 NC 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,882
Number of Sequences: 438
Number of extensions: 4392
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)