Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K06
         (1196 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.            32   4.7  
AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.               32   4.7  

>AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.
          Length = 6884

 Score = 31.9 bits (69), Expect = 4.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 178  NNSFS*SLYSEYKQCI*RXLCLVDXYXTSRERAXXAEIEDGLLPTD 315
            NNS     ++E ++ I    CL+D Y T   +    E ED LLPT+
Sbjct: 1996 NNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEIEEEDKLLPTE 2041


>AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.
          Length = 6885

 Score = 31.9 bits (69), Expect = 4.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 178  NNSFS*SLYSEYKQCI*RXLCLVDXYXTSRERAXXAEIEDGLLPTD 315
            NNS     ++E ++ I    CL+D Y T   +    E ED LLPT+
Sbjct: 1997 NNSLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEIEEEDKLLPTE 2042


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,390,735
Number of Sequences: 237096
Number of extensions: 1186682
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16844146380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)