Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K05
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   8.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 710 RASQKSTLKSEVAKPDRTIKIPGVPPWKLLVRSPVPT 820
           +  +  T+ +  A+ D T+K  G PP  +     VPT
Sbjct: 74  KKKKSKTILAVNAEADITLKNAGTPPEAVSYNVAVPT 110


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 710 RASQKSTLKSEVAKPDRTIKIPGVPPWKLLVRSPVPT 820
           +  +  T+ +  A+ D T+K  G PP  +     VPT
Sbjct: 74  KKKKSKTILAVNAEADITLKNAGTPPEAVSYNVAVPT 110


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/50 (24%), Positives = 19/50 (38%)
 Frame = -1

Query: 813 TGERTRSFQGGTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPF 664
           T    +    GTP  F + +    +   +D   +R+G      TPA   F
Sbjct: 618 TRSTEKRVSAGTPAAFNISTTIYENQNCLDASSSRRGSKIGSPTPAESTF 667


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,672
Number of Sequences: 438
Number of extensions: 4250
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)