Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J04
         (981 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.4  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 715 AXAPXPXXLXTGRXPPXXQPPRPXXGPXP 801
           A  P P    + + P    PP P  GP P
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
 Frame = -3

Query: 280 GGXPPXEXXPWXXINRXIKXAFH--PMAPYPK 191
           G  PP    PW  I   I    H  P  P+P+
Sbjct: 353 GNFPPRPMGPWISIQEQIPRFRHIGPPTPFPR 384


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 557  GAXKHTPPPPRNXE 598
            G+ +  PPPPRN +
Sbjct: 1855 GSPEPPPPPPRNHD 1868


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,216
Number of Sequences: 438
Number of extensions: 4877
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)