Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_J03
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   4.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.5  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 470 GHGENKQTTEMLP 508
           G+G NK+T  MLP
Sbjct: 58  GYGSNKKTRHMLP 70


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 529 SELAEDTREHLCGLLILPVSGNR 461
           +++   T+EH+CG+  +P S  R
Sbjct: 531 TDVIPGTQEHVCGVKGIPCSWGR 553


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 572 QHSTQSFSVGSTRRVRAG*GYPG 504
           Q++  ++ +G+  RVR G  YPG
Sbjct: 349 QNNVPNWVMGNHDRVRVGTRYPG 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,553
Number of Sequences: 438
Number of extensions: 3295
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)