Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I12
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   2.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.5  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 325 FTNRHGSSLVEPISVRKIENLRNMGQ--QTSRKSGECTC 435
           FT  H   + E + +  IENLRN  +    +R   EC C
Sbjct: 323 FTTVHRICIGETMPMELIENLRNHPEYIDETRNYQECKC 361


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 815 IALSFVCXVSFLLPSSAGLPSVSGV 741
           + +SF+C + F LP+ AG     G+
Sbjct: 245 VLISFLCVLVFYLPAEAGEKVTLGI 269


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 410 EVCCPMFLRFSIFRTLIGSTSELPC 336
           EV CP++    +   +I S  EL C
Sbjct: 316 EVLCPLYKYLQLIENVIPSNEELIC 340


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 410 EVCCPMFLRFSIFRTLIGSTSELPC 336
           EV CP++    +   +I S  EL C
Sbjct: 331 EVLCPLYKYLQLIENVIPSNEELIC 355


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 640 LRRELDAIVINTESDAARDGDATAELYVLSVAPRTPDTEG 759
           LRRE D       +  A D D T E        RTP T+G
Sbjct: 315 LRREKDRGSREYPTSNATDTDGTKERTEEVALDRTPVTQG 354


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 120 FLSKIVKVTL*ILNYSLINISRNHNE 197
           FLS I  V   I +  L+N+S NH E
Sbjct: 537 FLSDINGVFTSIASLLLLNLSENHIE 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,652
Number of Sequences: 438
Number of extensions: 4719
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)