Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I07
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 366 ELLKTHHSLLRNLDMQGFTLPIE 434
           +LLK+  SLL N   QGF  P +
Sbjct: 7   QLLKSRESLLSNAYKQGFCQPTQ 29


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 471 LSFWVHLYFLSIFLW 427
           LS W ++Y++ I  W
Sbjct: 107 LSCWTNIYYIIILAW 121


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 471 LSFWVHLYFLSIFLW 427
           LS W ++Y++ I  W
Sbjct: 160 LSCWTNIYYIIILAW 174


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 492 LQQNGFLKDRYIFKNPSDEFSKKLLKGG 575
           L   G +KDR  ++   D   K LLK G
Sbjct: 71  LNPGGSVKDRIAYRMIQDAEDKGLLKPG 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,574
Number of Sequences: 438
Number of extensions: 3585
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)