Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I02
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.17 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.69 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   2.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   6.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 17/85 (20%), Positives = 33/85 (38%)
 Frame = +1

Query: 565 GELGQGNGGVVMKVRHKSTGLIMARKLIHLEVKPAIKKQIIRELKVLHECNFAHIVGFYG 744
           GE G    G +       T + +A K +        +   + E  ++ +    +++   G
Sbjct: 642 GEFGDVCRGKLKLPPDGRTEIDVAIKTLKPGSADKARNDFLTEASIMGQFEHPNVIFLQG 701

Query: 745 AFYSDGEISICMEYMDGGSLDLILK 819
                  + I  E+M+ GSLD  L+
Sbjct: 702 VVTKSNPVMIITEFMENGSLDTFLR 726


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 240 KYPFVKALFYNVHTATVXLTKKLKHKQNYSKRXPNPAIN 124
           +YP  ++LF    T  +     L+HK+  ++R  +P +N
Sbjct: 130 EYPTNRSLFIREQTEEMYREMLLEHKKRRARRDIHPELN 168


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 404 LSFAVADLSCGVMLDGVAVGFVSIXPWWK 318
           L+  V D   G + +  A GFV    WW+
Sbjct: 400 LTMPVRDAIAGTICENSAWGFVGNSLWWE 428


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 544 DDDFEKLGELGQGNGGVVMKVRHKSTGLIMARKLIHLEVKPAIK-KQIIRELKVLHECNF 720
           D+D  ++  LG+ +GG   +   + T L+M  +    E    +  K +   + VL   + 
Sbjct: 22  DNDRSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDTQTLNLKHLRAAVLVLTNPSN 81

Query: 721 AHIVGFYGAFYSDGEIS 771
             +    GA  S GE S
Sbjct: 82  EVVAVALGALLSKGEES 98


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/80 (17%), Positives = 32/80 (40%)
 Frame = +1

Query: 319 FHQGSIDTNPTATPSNMTPQLKSATANDRRQGLAGKSKTSIEALTERLEQIEMDDTQRRR 498
           F    +D    ++  + +P L ++  +        K+       TE+L Q+E++    + 
Sbjct: 28  FSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKE 87

Query: 499 IEVFLCQKEKIGELSDDDFE 558
           +     +   +  L +D FE
Sbjct: 88  VNDKKEENFIVDRLRNDLFE 107


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 727 IVGFYGAFYSDGEISICMEYMDGGSLDLILKKAG 828
           +V  +  F +   +   MEY++GG L   +++ G
Sbjct: 47  LVQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCG 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,179
Number of Sequences: 438
Number of extensions: 3444
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)