Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_I01
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.          200   1e-53
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.9  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score =  200 bits (489), Expect = 1e-53
 Identities = 91/117 (77%), Positives = 104/117 (88%)
 Frame = +1

Query: 172 QLMASRCVTKAAIAGHAGNVWAKSEGFEISKAXVAKXVAGFEXESLLTSGGVXIAGTRYI 351
           QL+ASRCVTKAAIAGH GN+WAKSEGFE+SK  + K V GFE + +LTS GV +AG RYI
Sbjct: 10  QLLASRCVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQGFEEQDILTSSGVTLAGNRYI 69

Query: 352 YLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 522
           YLSGTD +IRAKLGKVGVHCMKT QAVV+SLYE+PIQPQQAASVVEKLG+YL++CGY
Sbjct: 70  YLSGTDRVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCGY 126


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 462 LDGFFIERNDHSLLCLH 412
           + G  IER DH++LC++
Sbjct: 327 ISGAPIERPDHAVLCVY 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,382
Number of Sequences: 438
Number of extensions: 3984
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)